RNA id: TCONS_00040395


Basic Information

Item Value
RNA id TCONS_00040395
length 3776
RNA type mRNA
GC content 0.48
exon number 9
gene id XLOC_020348
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 18469004 ~ 18485470 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTGGGACTTCACGGTGGTGACGTTGGTGCTGTCTACTGTCTTTGTTGTGTCTCTGGCACAAGGACCCATCTGGGACAGCTCACGTCTTCGGAGGTTAAACCAAACAGACAGAAACAGAAAGCTGGCTTACAACACCCTCGTGGAACCACAGACCACAGGCGTGACAGAGTGGACATCCTGGTTCAATATTGATCATCCAGGAGGAAACGGTGACTATGAGAGGTTAGAAGCCATTCGCTTTTACTATCGAGAAAGAGTCTGCTCACGACCTGTAGCGATGGAGGCCCGTACCAcagactgggttgcagctgcagaTACAGGGGAGGTGGTCCATTCCAGTCTGGAGAAGGGCTTCTGGTGCATCAATAAGGAGCAGCCGTTTGGCCGCAGCTGCTCCAACTACCATGTGCGATTCCAGTGTCCACCAGtgcactcATACTGGACTGACTGGAGTGAATGGACGCCTTGCAGTGCCACTGCCTGTAATGATGTTGGCATCCAAGTCCGTCAGAGGAAATGCATGAGCACGCAACCTCTTCCATTGCTGCTTTCGCCCGTCTGTGTGGGACCTCACATTGAAAGGAGAGAGTGTTCAACACCACCATGTCAAGCCATGTGGAGCCAGTGGGGTTCATGGGGAGCTTGCTCAGTAACCTGTGGAAAGGGACGGAGGACAAGACGTAGGACATGCCACAGATCTTCTACTAAGATTCAGTGTACAGGACGACCCATAGAGGTGCAAAAGTGTGGAAATCCATGCCCAGtgaaATGCAAACGTGTCTGTCCTGGGGGACGTCCCGATAAGAGCTGCAGCTACTGTATCTGCGATGGACAGGCACTACATGGGGAAGTCTTCAGCATTACAGGGGTCCCAGTGATGAATGCCACGGTGGCTTTGGCCAGCCAAGCCAAGATTATCCGTGCCCACACTGATGCCAAGGGTCAGTTCAAGATGGATGGGCTGTGCATCAGTCCTCAGACCCAAATTGTCATTAGAAAGGATAAATTTGCACCTGCCACTCTCCCAGTGTCCAACAACAGTACTGATGAACTTTGGGTACGGGCTATCTTGCAATCATCAGAAAAGCCATATATTGAGAAGCATCCTGAAGACAAAGTACGTTACGAGGGACAACGTGCAACTCTTTGCTGTAGAGCAACAGGATCACCAAAACCTGACAAATATTACTGGTACCACAATGGAACCTTACTGAATCGTACAATTTTCAAATATGACGAAGATTTGATATTGCGAGACCTCAAACCAGAGCAGTCTGGGCAATATCACTGCAAAGCAACTAGTCTGACAGGCAGCATCAAGTCTACTTCAGCGGTCCTCACTGTTTTCACTAAAGGGACCCCAGCATGCAAGTCAACACCTGAAACCCACCTGATCAAACTACCATTAGACTGCAAACAGCCTGGAACAGACTCCAAATTTTACAATGCAGGTCGCTGTCCACACAACAAATGTCCTGGGGCACTGGACTTTGACATGCGATGCAGGGATGGAACAGGTTTCTGCTGTGGGGTCAAAGAAATGGACGCAAAAGAAATCAACTGTGGCCGCTACACCCTCCCTATCAAGGTTGTGAGTGAATGTGGCTGCCAAACTTGTGTAGAGCCTAAAGTTCTTGTACGGGGCAGGGTGGTGGCAACAGACAATGATGAACCTCTGCGCTTTGGACACATTTACATTGGGAAGGAACGAATAGGTACTACAGGATATCAGGGTGGCTTCACAATCCAGGTGTCTCCAGAAACACAGCGTTTAGTGGTAAACTTTGTGGACCCTTCTCAGAAGTTCATTGACACAATCAAGGTTTTTATCTTTGACAAGAGAGGAGGTGCAGTCTACCATGACGTCAAAGTGATGAGGAAGCAGGAACCTATTGATATCAATGCTGCAGAAAGCAACACCATTTACCTAGGTGAAATGAAGGATGAGGATCCCATCGGTCAACTGGTCATACCTCCAAACTCTTTCCATAAAAACACAGGGGAAGTGTATGAAGGGACTGTTAAGGCCAGTGTGACATTCCTTGATCCACGCAATATTACAATGGCTGCTGCCGCCCCTGGTGATCTTAACTTTGTCGATGATGAAGGAGACATGCTCCCTCTCAGGACATATGGAATGTTTTCAGTAGATTTCCGAGATGGAGAAAACCAGGAGGTTCTAGGAGCTGGTGCAGTGCAAGTTCTCCTTGATACAGAGCATGTCAAAATGCAGGAGCACATCCCTGCTATGAAACTCTGGTCCCTCAATCCTGACACAGGTATTTGGGAGGAGGAGAGTAACTTTCAGCCAACACAAAGTACCATTGCTGGCACTGGGAGAAACAAACGAGAGGAACGCACATTCTTAATAGGAAATATGGAAATCAGGGAGCGTAGGTTGTTCAATCTTGATGTACCTGAAAATCGCCGCTGCTATGTCAAGGTTAGGGCATACATGAGTGACAAGTTCTTGCCCAACGAGCAACTCGAAGGAGTTGTAATAAACTTGATTAACCTGGAACCTAAACCTGGTTACTCGTCAAATCCGCGAGCCTGGGGTCGCTTTGATAGCGTGATAACAGGACCAAACGGTGCTTGTCTTCCAGCTTTCTGTGATGCTCAGAGGGCTGATGCTTACACAGCTTATGTAACGGCTATAATGGGAGGAGAGGAACTAGAAGCAGCTCCCTCAATGCCAAAAATGAACCCAAACATTATTGGTGTGTCTCAGCCATATTTAGGGAAGTTAGATTACCAGCGTTCAGATCATGAGGACTCAGCACTCAAAAAAACAGCCTTCCGAATAAACCTGGCCAAACCAAACCCTAACAATTTTGATGAAACAAATGGACCCATCTATCCTTTCCAGAGTTTAATTGCATGTGAAAATGCACCTGTTGATGCCAACCACTTTCGTTTTTTCCGTGTTGAAAAAGATAAATATGAATACAATGTGGTACCCTTTCAGGAAAGTGACCTTACATCTTGGACTGGAGACTACCTTTCCTGGTGGCCAAATCCACAAGAGTTCAGAGCTTGCTTCATTAAAGTTAAGATTCATGGAGCTACAGAAATTATGGTAAGGTCAAGAAATCTTGGTGGGACTCATCCTCAAACAAGAGGTCAGTTGTATGGTATTAGAGACATTCGCAGTACTCGAGACTTACACCATCCCAACACCTCTGCTGCTTGTCTTGAATTTAAGTGCAGCGGGATGCTCTTTGATCAAGGTAGTGTAGACAGGTCACTCATTTCTGTGATCCCACAGGCCAACTGCCGTCGTATAGGCATTAACAGTCTCCTGCAAGAGTATCTGATAAAGCATCCCCCTGTTCTTCAGAATAATGAGTCACATGCATTCAATATGTTAGCACCCGTTGATCCCCTTGGACACAATTATGGAATATACACCGTCACGGACCAGAACCCACGCGTTGCCAAAGAGATCGCCATTGGCCGCTGCTTTGATGGAACTTCAGATGGTTTTTCCAGGGAGATGAAGTCAGATTCTGGAGTGGCACTGACGTTCAGCTGCCCTAAAAGAACTGTGAATCGCGAGAGCTTATTCCAACGCTTGCAAACAAATCCAGGCCTAACACTAACACAGATGGCACGGGAGATGAGGGAGTCCCAGGGATTACAAGTCAGAAGAGGGTCAACTCAAATGGTGGCCTACCCCTTTGGCCAACAGGGCAGGAGCCAGAACCGCAGAGCCACGAACACTAACAGAAGGAGACCTGCTTCAAGGACACAACCAAGACAGTAGATCTTTAG

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-436 Predicted to be located in extracellular region. Orthologous to human CILP2 (cartilage intermediate layer protein 2).

Ensembl:

ensembl_id ENSDART00000061430

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042123 lncRNA upstream 164716 18253157 ~ 18304288 (+) False XLOC_020344
TCONS_00042127 lncRNA downstream 74873 18560343 ~ 18569388 (+) False XLOC_020351
TCONS_00042128 lncRNA downstream 74873 18560343 ~ 18596258 (+) False XLOC_020351
TCONS_00042129 lncRNA downstream 80101 18565571 ~ 18569388 (+) True XLOC_020351
TCONS_00041895 lncRNA downstream 1353805 19839275 ~ 19839592 (+) True XLOC_020382
TCONS_00042130 lncRNA downstream 1526326 20011796 ~ 20050276 (+) True XLOC_020383
TCONS_00040394 mRNA upstream 4350 18389271 ~ 18464654 (+) True XLOC_020347
TCONS_00040391 mRNA upstream 81085 18319230 ~ 18387919 (+) False XLOC_020346
TCONS_00040390 mRNA upstream 81085 18319230 ~ 18387919 (+) False XLOC_020346
TCONS_00040393 mRNA upstream 81085 18349794 ~ 18387919 (+) True XLOC_020346
TCONS_00040392 mRNA upstream 85848 18319666 ~ 18383156 (+) False XLOC_020346
TCONS_00040397 mRNA downstream 12289 18497759 ~ 18498645 (+) True XLOC_020349
TCONS_00040398 mRNA downstream 44925 18530395 ~ 18534262 (+) False XLOC_020350
TCONS_00040399 mRNA downstream 44933 18530403 ~ 18537415 (+) True XLOC_020350
TCONS_00040400 mRNA downstream 301327 18786797 ~ 18813682 (+) False XLOC_020352
TCONS_00040401 mRNA downstream 322057 18807527 ~ 18824801 (+) False XLOC_020352
TCONS_00040385 other upstream 188564 18247292 ~ 18280440 (+) False XLOC_020344
TCONS_00040386 other upstream 188564 18253158 ~ 18280440 (+) False XLOC_020344
TCONS_00040387 other upstream 214149 18254769 ~ 18254855 (+) False XLOC_020344
TCONS_00040381 other upstream 293626 18166599 ~ 18175378 (+) False XLOC_020342
TCONS_00040377 other upstream 644431 17824459 ~ 17824573 (+) True XLOC_020339
TCONS_00040420 other downstream 751561 19237031 ~ 19238226 (+) True XLOC_020360
TCONS_00040469 other downstream 1286228 19771698 ~ 19771812 (+) True XLOC_020380
TCONS_00040470 other downstream 1307649 19793119 ~ 19793233 (+) True XLOC_020381
TCONS_00040472 other downstream 1654055 20139525 ~ 20139592 (+) True XLOC_020385
TCONS_00040475 other downstream 1666455 20151925 ~ 20151981 (+) True XLOC_020387

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000030_02641511_02650047.mRNA True 4795 mRNA 0.47 9 CI01000030 2641045 ~ 2650539 (+)