RNA id: TCONS_00041215


Basic Information

Item Value
RNA id TCONS_00041215
length 2891
RNA type mRNA
GC content 0.40
exon number 8
gene id XLOC_020954
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 11440705 ~ 11493236 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAGTGACTGGAGCAGAGGCGCAGCGGAGAATCACAGCAGCACAAACCCACTGCGCTCATGGCATCAAGGAGAATGGAGACCAAACCAGTCATAACCTGCCTCAAAACGCTCCTCATCGTCTATTCCTTCGTGTTCTGGATCACGGGGGCAATCCTGCTGGCGGTGGGATTATGGGGGAAGTTCATCTTGGGTCCGTACATCTCTCTGATTGCTGAAAACTCCACCAATGCTCCCTATGTGCTCATCGGGACCGGGACGACCATCATCGTGTTCGGGCTGTTCGGCTGCTTCGCAACATGTCGCGGGAGTCCATGGATGCTCAAACTGTACGCCATGTTCCTGTCTCTGGTTTTCCTGGCAGAGCTGGTCGCTGGCATCTCGGGCTTTGTTTTCCGTCATGAGatCAAAGGCACCTTTCTGAGGACGTACAACGAGGCCGTTCAGAACTACAATGCGCAGGATGAGAGAAGCATCGCAGTGGATAACGTCCAGAGGAGTTTGCGTTGTTGTGGTGTCCTGAACTACACCAGCTGGTTCTCCAGTGTTTATTTCCCTGTGAATGGAATCCCTCCGAGCTGCTGCGCGAACATCTCCGACTGCAACGCTTCAGACCTGCGAAACGCTACCATAGCACCTACCAAAGTCTATCAGcagGGCTGCTATGAGCTGGTGACAACCTTTATTGAGACTAACATGGGCATTATTGCTGGAGTAACATTTGGAATTGCATTCTCACAGctGATCGGGATGCTGTTGGCCTGCTGTCTGTCACGATTCATCACTGCCAATCAGTACGAGATGGTGTAGCGGAGGGAGGAAAGGCACTAAAGATGTACGTCACCTGGAAAGGGAAAGCAACCCAAAAATGCTTGCACACTCCATTCTTTCACATCTCttttttactctctctctccttttatCTTTAATTTCTTTCTTGCCTTTTTTCTGCTTTCTGTCATTCCTTAATCATGCAGTTGTGCCATGACCAAAGCCTCTCCTTTCAAAACGTCAGCGTTAGCGAGGACAAGGAAACGGTTTTAAGACGCACTCCTGCGTTCCTGCATTTTACTCTGTATAAAACCTTGCATGCGGAAAccatcgcacacacacactataactaAAGCATTTTTGTAACACCACGTCCTAACCGCTCGCAGGAAATCGATATCGCAATCCATCTCTCGCTGTACTGTATATCAAATATGTTATCGGTGGTTTTGTTGCCTTTGCATAGGATTTTCTATTTCAGACACAAAAATCACTCAGTACTTTATTAGGACATAAGCGTGACGTGTGACTTGTTCGCTGTTTatataatatactttttttgGAGAAAAGTCTGTTTTTCTTTACTATCCACCATTTTGTGAGCTTAGTTACTATTGGTCAGGTTGCAATTAGTAGCTCCGCCCACAGTGAAATCTCATTGGTCCAGATAGCTGTATATTGTTACAAACTGGATGTTCTAATTGGCTATTTTGTGCTAAGTTTTGCAGTACTTTTACTTATTTACATTCAAAACTTTGCACATCTTGTTAGGACATGGTGTTACTTAACCCCTAAACAAGTGACTTTGTTAGTTACTTGATTTTTGGAgagaaaaaactattaaaaatacaaacaaatggcAAGATgttttcgttgttgttgttgctgctgttgtaAAATCTATGGCAAAGGGGTTCATCTCAGAAACggctttaaaatataatttcatttaatttttttcgcTTCGGGTTGAAAGTGACTTGACGTGTTCATGTGCCGAGTCAAAAACATCAATGTAGTTTCACTGGAAAGCCAAAAAACAAGCAATTTTCTGCCACAAACTGTATAGGCTTGTACAGACCTCAAGTAGATGCCGACTGGAGTGTAAATGTGAAAAACATTaggcttttatgttgttgttgttgttgttgttgtaagacAAGCAGATATTTCAGAGTACTAACTAAACACTGTTTAACAGACAACTTTATGGCTAATTCAACAGTTAATAGGTGGTAGTTACAGTTTTACACTATATCTACCTTGTGACACTGTTATTTCGTGGTGTTTTAATGTAAGAATGTAATCAAACTGAACGTCTCTTTCAGAATTGAGGATGATCATGTTTAACAGCTCCAAGAATGTCCAGATAATTTCAAGAGGAATGAATATTTGCATGAGGAAAACATGAAAATGATGAGAATTTTGGTATGATGAAGGATGTTTCTAAGGATTCTATGTTGTTTTTAAGAAAATATGAGATGTTAGACTTGCTAAATCCTTGCTAGTTTGTctagtttaaaacattttgattcaaaatctaatatataaagtgaaataaataaatttttctaGAGGTTTGAGTCAAATAATTTCTTGAAACATCTTTACCTCAGTTTGTTTTTgcttaataaaatgttttgttgattTAGAAGTATTAAAGACTGAGCCAAACTTTAGACACCTCcgctgtttatttattatttattaaaacataactTATGTGGTCAAAATTGCTGCAGTCTTTGGCTTTCGTTTTGTTTCGAGTCTACCATGCAGTACTGTTATTTTCATGTGTCACTGTTTTCTCTTTTTAATCTAATTTCATGTTGTTTTGTATGGTTTTCTCATTGGCCATTTTGTTATCATTCAGCCTTAGCTAGTTAATATGTTAAACGATCATTTCTGAAGCTGCCCCTTGTGTTGATTGATCATCAATTAAGTATTAGAATCCAGAATTCATAGTGATGAACTACACATCTCCAGAGAAATAATGTAGGCTactttgtataataaaaataaacactttttaaaatgcatCACCAGCTAGCATGCCAACAAAATGTACGTTGATATTGTAAACATCCGTGATCTCTATGAATAAAATGGTTCTTCGTCGTTA

Function

GO:

id name namespace
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040927-5 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in basal plate midbrain region; nervous system; notochord; and pancreatic bud. Human ortholog(s) of this gene implicated in non-syndromic X-linked intellectual disability 58. Orthologous to human TSPAN7 (tetraspanin 7).

Ensembl:

ensembl_id ENSDART00000002691

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042350 lncRNA downstream 336434 11102905 ~ 11104271 (-) True XLOC_020951
TCONS_00042348 lncRNA downstream 342868 11082942 ~ 11097837 (-) True XLOC_020948
TCONS_00041209 lncRNA downstream 349606 11090338 ~ 11091099 (-) True XLOC_020950
TCONS_00042349 lncRNA downstream 351005 11087404 ~ 11089700 (-) True XLOC_020949
TCONS_00042347 lncRNA downstream 513747 10922765 ~ 10926958 (-) True XLOC_020945
TCONS_00041221 lncRNA upstream 112856 11606092 ~ 11614953 (-) False XLOC_020957
TCONS_00041222 lncRNA upstream 116194 11609430 ~ 11614953 (-) True XLOC_020957
TCONS_00042351 lncRNA upstream 178953 11672189 ~ 11674421 (-) True XLOC_020961
TCONS_00042352 lncRNA upstream 204036 11697272 ~ 11698675 (-) True XLOC_020962
TCONS_00041248 lncRNA upstream 1111082 12604318 ~ 12609544 (-) False XLOC_020970
TCONS_00041214 mRNA downstream 2078 11436447 ~ 11438627 (-) True XLOC_020953
TCONS_00041212 mRNA downstream 303437 11123931 ~ 11137268 (-) False XLOC_020952
TCONS_00041210 mRNA downstream 303957 11123487 ~ 11136748 (-) False XLOC_020952
TCONS_00041213 mRNA downstream 304080 11124521 ~ 11136625 (-) True XLOC_020952
TCONS_00041211 mRNA downstream 316286 11123489 ~ 11124419 (-) False XLOC_020952
TCONS_00041216 mRNA upstream 4130 11497366 ~ 11517377 (-) False XLOC_020955
TCONS_00041217 mRNA upstream 6484 11499720 ~ 11520405 (-) True XLOC_020955
TCONS_00041218 mRNA upstream 45156 11538392 ~ 11594414 (-) True XLOC_020956
TCONS_00041219 mRNA upstream 103196 11596432 ~ 11614973 (-) False XLOC_020957
TCONS_00041220 mRNA upstream 105806 11599042 ~ 11606078 (-) False XLOC_020957
TCONS_00041199 other downstream 676658 10763933 ~ 10764047 (-) True XLOC_020940
TCONS_00041196 other downstream 772731 10667858 ~ 10667974 (-) True XLOC_020936
TCONS_00041173 other downstream 1282599 10156402 ~ 10158106 (-) True XLOC_020918
TCONS_00041160 other downstream 1361036 10076578 ~ 10079669 (-) False XLOC_020914
TCONS_00041139 other downstream 1614236 9824521 ~ 9826469 (-) True XLOC_020903
TCONS_00041246 other upstream 1091603 12584839 ~ 12584954 (-) True XLOC_020969
TCONS_00041251 other upstream 1114097 12607333 ~ 12611301 (-) False XLOC_020970
TCONS_00041252 other upstream 1123913 12617149 ~ 12626105 (-) False XLOC_020970
TCONS_00041253 other upstream 1131030 12624266 ~ 12626079 (-) False XLOC_020970
TCONS_00041266 other upstream 1440249 12933485 ~ 12934589 (-) False XLOC_020979

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU185401 True 10057 lncRNA 0.38 3 CI01000030 7296250 ~ 7306353 (-)
bowfin (Amia calva) AMCG00014289 True 1381 mRNA 0.47 7 CM030128.1 7845556 ~ 7855351 (+)