RNA id: TCONS_00041228


Basic Information

Item Value
RNA id TCONS_00041228
length 1058
RNA type mRNA
GC content 0.44
exon number 4
gene id XLOC_020960
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 11657139 ~ 11661724 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAACAGATCACTGGAAGGACCATGCTGGAGTGTTGTGTTTACTAGTCTGTGTCGGATTTTCCTCACATTTCCTTTGCATTATAAGCAAACGAATTAAAAACGTAACATAATAAAGCACTGTTAACTCGTTGGATTTACAAAACAGACATTTTATCAGCTCGAGATGGCTTTGGTTCCTTATGATGAGAATGTTCTTCCTGCTCTGTCAAAACTGCATCAGTCTTCAGCTGAATTCACTCTGGCCAATCACAGGATCAGACTCAGTCAGGACTGGAAGCGATTGGGTGTCGCTGCAGTGGTTTGGGACGCTGCAGTAGTTCTCTGCATGTTCCTGGAGATGGGAAAAGTGGATCTGAAAGGAAAGAGGGTTATCGAGCTGGGAGCAGGCACTGGTTTGGTGGGCATCGTAGCAGCTCTGCTGGGAGCCAATGTTACAATCACAGACCGAGAGCCTGCGCTGGAATTTCTGACAGCCAATGTACATGAAAACATTCCTCAAGGCCGGCAAAAGGCAGTACAGGTATCTGAACTGACCTGGGGGGAGAATCTAGATCTGTATCCTCAAGGCGGCTATGATTTAATTCTGGGAGCCGATATAGTTTACCTGGAGGAGACGTTTCCTGCACTTTTGCAGACTCTCGAACACCTGAGTTCAGGagatactgtggtgttgttgtccTGCAGGATTCGATATGAGCGAGACGAGCGTTTTCTGACGGAGCTCCGGCAGAGGTTTTCTGTGCAGGAAGTCCATTATGACTCTCAGAGGGACATTCATGTTTACAGAGCCGTGAAGAACAAGAGCAACACTGAACTGTAAGAGGAAACATTGAGGAAACGTTGGGtagagctgtttttatttttaatgaagtttgttttggttttgttaaaTATATTGAAGGTGATTAAATTACAGTATTTAACAGGACTATGGTGGTGGTTTTGGGTTTGTATGCTTGGATTTATTCAGGTCACTGCTTTGGCAGCAGGTGGTGCTGTTGTACAGgactgcaataataataatctgaattTATGATAAAATACACCTATTTTATCAG

Function

GO:

id name namespace
GO:0018022 peptidyl-lysine methylation biological_process
GO:0032259 methylation biological_process
GO:0005829 cytosol cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0016279 protein-lysine N-methyltransferase activity molecular_function

KEGG:

id description
ko03110 Chaperones and folding catalysts

ZFIN:

id description
ZDB-GENE-050320-145 Predicted to enable protein-lysine N-methyltransferase activity. Predicted to be involved in peptidyl-lysine methylation. Predicted to act upstream of or within methylation. Predicted to be active in cytosol. Orthologous to human METTL21A (methyltransferase 21A, HSPA lysine).

Ensembl:

ensembl_id ENSDART00000025198

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00041221 lncRNA downstream 42186 11606092 ~ 11614953 (-) False XLOC_020957
TCONS_00041222 lncRNA downstream 42186 11609430 ~ 11614953 (-) True XLOC_020957
TCONS_00042350 lncRNA downstream 552868 11102905 ~ 11104271 (-) True XLOC_020951
TCONS_00041209 lncRNA downstream 566040 11090338 ~ 11091099 (-) True XLOC_020950
TCONS_00042349 lncRNA downstream 567439 11087404 ~ 11089700 (-) True XLOC_020949
TCONS_00042351 lncRNA upstream 10465 11672189 ~ 11674421 (-) True XLOC_020961
TCONS_00042352 lncRNA upstream 35548 11697272 ~ 11698675 (-) True XLOC_020962
TCONS_00041248 lncRNA upstream 942594 12604318 ~ 12609544 (-) False XLOC_020970
TCONS_00042353 lncRNA upstream 942594 12604318 ~ 12611301 (-) False XLOC_020970
TCONS_00041254 lncRNA upstream 962762 12624486 ~ 12626063 (-) True XLOC_020970
TCONS_00041227 mRNA downstream 8817 11628554 ~ 11648322 (-) True XLOC_020959
TCONS_00041226 mRNA downstream 9045 11628438 ~ 11648094 (-) False XLOC_020959
TCONS_00041224 mRNA downstream 31121 11617520 ~ 11626018 (-) False XLOC_020958
TCONS_00041225 mRNA downstream 31125 11620630 ~ 11626014 (-) True XLOC_020958
TCONS_00041223 mRNA downstream 34076 11617520 ~ 11623063 (-) False XLOC_020958
TCONS_00041229 mRNA upstream 48743 11710467 ~ 11714158 (-) False XLOC_020963
TCONS_00041230 mRNA upstream 48790 11710514 ~ 11714106 (-) False XLOC_020963
TCONS_00041231 mRNA upstream 48793 11710517 ~ 11714104 (-) True XLOC_020963
TCONS_00041233 mRNA upstream 55705 11717429 ~ 11724563 (-) False XLOC_020964
TCONS_00041232 mRNA upstream 55705 11717429 ~ 11724563 (-) False XLOC_020964
TCONS_00041199 other downstream 893092 10763933 ~ 10764047 (-) True XLOC_020940
TCONS_00041196 other downstream 989165 10667858 ~ 10667974 (-) True XLOC_020936
TCONS_00041173 other downstream 1499033 10156402 ~ 10158106 (-) True XLOC_020918
TCONS_00041160 other downstream 1577470 10076578 ~ 10079669 (-) False XLOC_020914
TCONS_00041139 other downstream 1830670 9824521 ~ 9826469 (-) True XLOC_020903
TCONS_00041246 other upstream 923115 12584839 ~ 12584954 (-) True XLOC_020969
TCONS_00041251 other upstream 945609 12607333 ~ 12611301 (-) False XLOC_020970
TCONS_00041252 other upstream 955425 12617149 ~ 12626105 (-) False XLOC_020970
TCONS_00041253 other upstream 962542 12624266 ~ 12626079 (-) False XLOC_020970
TCONS_00041266 other upstream 1271761 12933485 ~ 12934589 (-) False XLOC_020979

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000030_07179638_07180532.mRNA True 830 mRNA 0.47 3 CI01000030 7179549 ~ 7180616 (+)