RNA id: TCONS_00041265


Basic Information

Item Value
RNA id TCONS_00041265
length 2558
RNA type mRNA
GC content 0.48
exon number 7
gene id XLOC_020978
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 12911236 ~ 12925741 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCAGACGACCGAGTGGCCATCTTAACAGAAGATGAGGAGGAGCTGAAGAGGAAACACCTTGAGCGCTTTGACCGCCTGTCACTTGAGATTCAGTCACCATCTCAACCACCTGAAAATGATGTACCAAATGATACAGCGCCAACTCCATCCCCTCAACACGAATTGAGCTGCTGTGAACGGTTGTTCTTACGCGTCAACCGCCACCTTCTTGTGtcaaaagtgttttatttgttcttttatgcCGCCTATGGTTCCCTTCATCCCCTTCTTGCTCTCTACTACAAGCAGCTGGGGATGAATCCAACTCAAAGTGGTCTCCTAGTGGGAATCCGATATTTCATAGAGTTCTGCAGTGCCCCTTTTTGGGGCATTGTCGCAGATCGATATAGGAAAGGAAAAGCAGTCTTGCTGTTCTCAATGTTGTGCTGGATCCTTTTCAATGCTGGGATTGGCATTGTGAAGCCCCCAATTATGGCATGTAAAGAGGAGACCATCCCGACAACGACCAAGGTACCAACTGTCCACCCTACCCCTTCTAATGAAACATTCTTCCCCAACACTAGTTCAACTAGTCAAATGAGACGGCGCAGGGATCTAATTGGACAATACCCTTGGCGAACCATCCTTTCCTCCGGTCAATCTTCAGGCTACATCTCTGAACATCGAATCAAACGAGATTCAAACTTGAGTTTTACCCCGGCACCTGAAGAACTGGCTAACACCACACAAACTAACCAAACCAGTACAACCACACAACCCAAGCCAAGCACGTCCATCTCAACATCAACCCCCAGCAGCACAAACACAACATCTAGCAGCACTACCAAGAGTACCACAACCAACCCAAACTTGCCACCCCCTGAGTATAACATGGACCAGGTTAACGCCATTTTTCTCCTGATTCTGCTCGTCATCATCATTGGCGAGTTTTTCAGTGCTCCAGCTATTACAATTGTAGATACGGTGACACTACACTACCTGGGTCCACACCGTGACAGATATGGACTGCAACGTATGTGGGGATCTCTAGGCTGGGGTCTTGCCATGCTCTGCATTGGCATCTGGATTGACCACACCAGCACCAACCTCATCATTGGCAACATGGAGTGCATCATGAAAAATTACAAGAACTATCACATTGCCTTCATTGTGTTTGGCGTGTTAATGGTAATCGCTCTGATCGTGGCAACTCAATTTAAGTTTGATGTTCAGCACCATGATACAAATGAAGGACAAGAGGTTGGTAATCAACAGGAAAATGTCCAACCTAGAGGTTCTCCTGGAACGAGGAGCACGGACACCCCAACAATTGTCCAAGCCGAGGAATTTCACTTCTGGGACTTGATGCGACTGCTGTGCGGCGTACAGTACAGCACAGTGTTATTCGTGGCCTGGTTCATGGGCTTTGGCTAtggatttgtttttacttttctttACTGGCATTTACAGGACCTGACAGGAACCACAACACTATTTGGTATTTGCTCTGTCCTCAGTCATGTGTCAGAACTTGCTGCCTATTTCACCAGCCACAAATTCATCGAACTAGTAGGACACATCAGAGTATTGTACATCGGCCTGGCCTGTAACACAGCACGTTACCTCTATATTTCGTATCTGGAGAACGCCTGGACTGTCCTGCCCATGGAAGTACTTCAAGGAATAACACATGCGTCAGTCTGGGCAGCTTGTATCTCATATCTGAGCGCGGCTGTACCTCCTCCACTTCGGACATCGGCTCAGGGTATCCTGCAGGGGCTCCATCTGGGCCTGGGCAGAGGCTGCGGAGCGATGGTCGGCGGGATATTTGTTAATTACTTTGGCGTTGCCGAAACGTTCAGGGGAATAGGAATGGCCTCGCTTGTTATTTTGCTCATCTTTTCATTAATCATGTACATCACTGGCCAGAATGAGAAGAAAGAGGACAAGATGCTAGCAGAGAACATACCTATCCCGTCTAGCCCTGTTCCTATCGCGACCATCGACCTGGTTCAGAACACAGCGGACGTGGCGGCACCCGCTCGACCTGAACCCAAACTTCCAGCCCGCAAAACTCAACACCAGCAGGAGCAGGAGGATCTGAATAAACCTGCCTGGGTCCCGTCCGGCTCTCCGTGGGTTTCGGTCGCTCTCCTGGTTTACCAGATCAGAGAGATGGTGCTCTTGGCAAAAGCACGGCCCACTGTTGAGGTCCAGCCACTTCAGGGCACAGATGAGGTCCGCTCGGACTCTCAAGAAGACCAATCACCTCCTGTCTTCAGCGACGCTGTGCAGAATGAAAACACTCCCAGTGGCCTTCAGGACCACTCCGGTTCACCCACTGCACAGCTGGATGTCCCAACACGGGATACACAGCCTCCATCACAACATATCAGCTGACACCAAAAACAAAACTGACCCGGTAACCACCGACTGCATTttattaagactttttttttttaaatctacgtTGGAAAACACAGGAACGGGTAACTTTTTAATGGCCTTGTAGGACTTCTAACTTATTTCCAGttgttttgcacaaaaaaaataagaatattaaTAAATCCTGGTGG

Function

GO:

id name namespace
GO:0042590 antigen processing and presentation of exogenous peptide antigen via MHC class I biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-335 Predicted to be involved in antigen processing and presentation of exogenous peptide antigen via MHC class I. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human MFSD6 (major facilitator superfamily domain containing 6).

Ensembl:

ensembl_id ENSDART00000063029

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042354 lncRNA downstream 124795 12777889 ~ 12786441 (-) True XLOC_020975
TCONS_00041257 lncRNA downstream 210248 12699121 ~ 12700988 (-) False XLOC_020972
TCONS_00041254 lncRNA downstream 285173 12624486 ~ 12626063 (-) True XLOC_020970
TCONS_00042353 lncRNA downstream 299935 12604318 ~ 12611301 (-) False XLOC_020970
TCONS_00041248 lncRNA downstream 301692 12604318 ~ 12609544 (-) False XLOC_020970
TCONS_00041942 lncRNA upstream 7549 12933290 ~ 12934717 (-) False XLOC_020979
TCONS_00041267 lncRNA upstream 7819 12933560 ~ 12940709 (-) True XLOC_020979
TCONS_00042355 lncRNA upstream 24079 12949820 ~ 12950292 (-) True XLOC_020980
TCONS_00042356 lncRNA upstream 32481 12958222 ~ 12964877 (-) True XLOC_020981
TCONS_00042357 lncRNA upstream 262120 13187861 ~ 13188332 (-) True XLOC_020985
TCONS_00041264 mRNA downstream 20315 12870275 ~ 12890921 (-) True XLOC_020977
TCONS_00041262 mRNA downstream 48821 12831675 ~ 12862415 (-) False XLOC_020976
TCONS_00041263 mRNA downstream 48821 12846949 ~ 12862415 (-) True XLOC_020976
TCONS_00041261 mRNA downstream 147886 12752286 ~ 12763350 (-) True XLOC_020974
TCONS_00041259 mRNA downstream 164697 12729329 ~ 12746539 (-) False XLOC_020973
TCONS_00041268 mRNA upstream 53472 12979213 ~ 13042992 (-) True XLOC_020982
TCONS_00041269 mRNA upstream 120529 13046270 ~ 13165186 (-) True XLOC_020983
TCONS_00041273 mRNA upstream 350952 13276693 ~ 13350356 (-) False XLOC_020987
TCONS_00041274 mRNA upstream 356736 13282477 ~ 13350240 (-) False XLOC_020987
TCONS_00041277 mRNA upstream 532994 13458735 ~ 13544244 (-) False XLOC_020989
TCONS_00041252 other downstream 285131 12617149 ~ 12626105 (-) False XLOC_020970
TCONS_00041253 other downstream 285157 12624266 ~ 12626079 (-) False XLOC_020970
TCONS_00041251 other downstream 299935 12607333 ~ 12611301 (-) False XLOC_020970
TCONS_00041246 other downstream 326282 12584839 ~ 12584954 (-) True XLOC_020969
TCONS_00041199 other downstream 2147189 10763933 ~ 10764047 (-) True XLOC_020940
TCONS_00041266 other upstream 7744 12933485 ~ 12934589 (-) False XLOC_020979
TCONS_00041270 other upstream 175995 13101736 ~ 13112322 (-) True XLOC_020984
TCONS_00041280 other upstream 785693 13711434 ~ 13716397 (-) False XLOC_020993
TCONS_00041282 other upstream 785693 13711434 ~ 13716585 (-) False XLOC_020993
TCONS_00041281 other upstream 785693 13711434 ~ 13716585 (-) False XLOC_020993

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000015_07890876_07898814.mRNA True 3539 mRNA 0.43 6 CI01000015 7890691 ~ 7899936 (-)