RNA id: TCONS_00041267


Basic Information

Item Value
RNA id TCONS_00041267
length 1383
lncRNA type inter_gene
GC content 0.47
exon number 4
gene id XLOC_020979
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 12933290 ~ 12940709 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACTCCTGTGACTCAAGAATGACCGTCTCACTCACAACACTGAATCCTGATGACAGAGCATCTACAACCctccacaagtcccaaaccagtGGTGaaagtggcgaggaacaaacttcactaattgacgaaagtgaaggaaaaaaattgagagaaaccaggctcacaACCAAATCTCCTCCGGTCAAACTTTCTGctcagagctgcagtctaggtgccggaggctggagaacgctggacgtccatcgttgAGAAGCTGCAGATCTGCTACTGTACAATAGCGTTTCCCTCCCAGATCCAGACACTGTTTCAtgtacacagacacaaacacacacctttgGCTGCTCCTTTGATGACAGACACCAAACTCTGTTTTTCCACAGAACCTCCAGGATGCATCTGTTCTTAGTTCTTCCCCTGGTGCTGAAAGTCCAGTCTATCTCCATGGGCCACAATGTCACCTGTGACTGTATCTGCCATGAGGGATTCAAAAGTGCTTACTGCTCCAACAATAATATCACCCAACTGCCCATCGCTCTTCCACCATTCACAGAAACCCTGAATCTGTCCCACAACCACCTGAACACCATCCCCCCACGAGCCTTCAACACCACACGAAAACTGCATTTCCTTTACCTGAACGACAACAATATTAGCATGTTAGCAGACGGGGCGTTCTTTCTACTGGAAGGTCTTAGGTGGTTGGACTTGAGTCGAAATCAAATATTATCCTTAAGTGAAGGGTTTTCAAAGGGTCTCAGTTCCCTTCAAGGTCTTTCACTGGCTGAGAACAGATTAACCAGCATGGATAGCAGTTATTTTCTCCACATGGACTCATTACAAAGACTCAATCTCAGCCATAACTCCATCCACACCATCAAAATGAGGGCGTTTGGGTCCATAAGTACGCTACGCCAGCTACAACTTGACTGGAACAAAATAACGATCCTCAATAATGGTATCTTTTCCATGCTGCGAAATCTTGAAGACTTAAATTTGCATCACAACCAGATACATAGCTTGGACGTCGGGGTACTTTCACCATTGACCAGCCTTGGTAAACTAGACCTTACCAACAACAACCTCTCCACGATTCAATTCAAGACCTTCTTGAGTCTCAACACGTACAGCACTCACATAATGCTGCGGGGAAACCCCTGGCGGTGTGACTGCGATCTCCAACGAGTCTTCCAGAAGCTCTGTAACGTCAAACGGCTCTTTCTGGATGACTACGACAGCCTCACTTGCTACTCATTTAACGACGAATTTAACGGAAACCACACTGTTTTTAAAGCGGTTGAGCTCTGTGTTGCAGAGATGGTTACTGTCCTGGTCATTACAATCACTGTGGTCATCACGGTTGTGGCGGCAATTGTCATGGcggag

Function

GO:

id name namespace
GO:0099643 signal release from synapse biological_process
GO:0050877 nervous system process biological_process
GO:0016079 synaptic vesicle exocytosis biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0009583 detection of light stimulus biological_process
GO:0048791 calcium ion-regulated exocytosis of neurotransmitter biological_process
GO:0009314 response to radiation biological_process
GO:0036368 cone photoresponse recovery biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0009628 response to abiotic stimulus biological_process
GO:0051234 establishment of localization biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0009416 response to light stimulus biological_process
GO:0023061 signal release biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0006810 transport biological_process
GO:0006812 cation transport biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0051648 vesicle localization biological_process
GO:0045055 regulated exocytosis biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0031234 extrinsic component of cytoplasmic side of plasma membrane cellular_component
GO:0030133 transport vesicle cellular_component
GO:0042995 cell projection cellular_component
GO:0001750 photoreceptor outer segment cellular_component
GO:0043005 neuron projection cellular_component
GO:0044433 obsolete cytoplasmic vesicle part cellular_component
GO:0030424 axon cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0044463 obsolete cell projection part cellular_component
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0120038 obsolete plasma membrane bounded cell projection part cellular_component
GO:0031045 dense core granule cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0019897 extrinsic component of plasma membrane cellular_component
GO:0019898 extrinsic component of membrane cellular_component
GO:0012506 vesicle membrane cellular_component
GO:1905360 GTPase complex cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0097730 non-motile cilium cellular_component
GO:0097731 9+0 non-motile cilium cellular_component
GO:0097733 photoreceptor cell cilium cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0098793 presynapse cellular_component
GO:0030658 transport vesicle membrane cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0017075 syntaxin-1 binding molecular_function
GO:0009881 photoreceptor activity molecular_function
GO:0000149 SNARE binding molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0019905 syntaxin binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042354 lncRNA downstream 147119 12777889 ~ 12786441 (-) True XLOC_020975
TCONS_00041257 lncRNA downstream 232572 12699121 ~ 12700988 (-) False XLOC_020972
TCONS_00041254 lncRNA downstream 307497 12624486 ~ 12626063 (-) True XLOC_020970
TCONS_00042353 lncRNA downstream 322259 12604318 ~ 12611301 (-) False XLOC_020970
TCONS_00041248 lncRNA downstream 324016 12604318 ~ 12609544 (-) False XLOC_020970
TCONS_00042355 lncRNA upstream 9111 12949820 ~ 12950292 (-) True XLOC_020980
TCONS_00042356 lncRNA upstream 17513 12958222 ~ 12964877 (-) True XLOC_020981
TCONS_00042357 lncRNA upstream 247152 13187861 ~ 13188332 (-) True XLOC_020985
TCONS_00042358 lncRNA upstream 260769 13201478 ~ 13244142 (-) False XLOC_020986
TCONS_00041271 lncRNA upstream 278156 13218865 ~ 13238671 (-) False XLOC_020986
TCONS_00041265 mRNA downstream 7819 12911236 ~ 12925741 (-) True XLOC_020978
TCONS_00041264 mRNA downstream 42639 12870275 ~ 12890921 (-) True XLOC_020977
TCONS_00041262 mRNA downstream 71145 12831675 ~ 12862415 (-) False XLOC_020976
TCONS_00041263 mRNA downstream 71145 12846949 ~ 12862415 (-) True XLOC_020976
TCONS_00041261 mRNA downstream 170210 12752286 ~ 12763350 (-) True XLOC_020974
TCONS_00041268 mRNA upstream 38504 12979213 ~ 13042992 (-) True XLOC_020982
TCONS_00041269 mRNA upstream 105561 13046270 ~ 13165186 (-) True XLOC_020983
TCONS_00041273 mRNA upstream 335984 13276693 ~ 13350356 (-) False XLOC_020987
TCONS_00041274 mRNA upstream 341768 13282477 ~ 13350240 (-) False XLOC_020987
TCONS_00041277 mRNA upstream 518026 13458735 ~ 13544244 (-) False XLOC_020989
TCONS_00041252 other downstream 307455 12617149 ~ 12626105 (-) False XLOC_020970
TCONS_00041253 other downstream 307481 12624266 ~ 12626079 (-) False XLOC_020970
TCONS_00041251 other downstream 322259 12607333 ~ 12611301 (-) False XLOC_020970
TCONS_00041246 other downstream 348606 12584839 ~ 12584954 (-) True XLOC_020969
TCONS_00041199 other downstream 2169513 10763933 ~ 10764047 (-) True XLOC_020940
TCONS_00041270 other upstream 161027 13101736 ~ 13112322 (-) True XLOC_020984
TCONS_00041280 other upstream 770725 13711434 ~ 13716397 (-) False XLOC_020993
TCONS_00041282 other upstream 770725 13711434 ~ 13716585 (-) False XLOC_020993
TCONS_00041281 other upstream 770725 13711434 ~ 13716585 (-) False XLOC_020993
TCONS_00041283 other upstream 771883 13712592 ~ 13716020 (-) False XLOC_020993

Expression Profile

//