RNA id: TCONS_00041280


Basic Information

Item Value
RNA id TCONS_00041280
length 2342
RNA type processed_transcript
GC content 0.33
exon number 7
gene id XLOC_020993
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 13711434 ~ 13716585 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttgtaggcaaaaccggagcacccagagaaaacccacgcaaacgcagggagaatttgcaaactccacacagaaatgccagctgatccagccgaggctcgagtcagcatccttgctgtaaggcgacagcactacctattgtgccaccacgtcacgctcttattaaattatatttatataatatattgtgtttcagtacatgctattttgggaagacaaaatatattcataagctcTCAGAAAATTCAATAAGAGAATTAACTGCACAATTACTTGAAATGCGTGGATgggattacattatttgttaacccaaagtgagtttctctttctttgcagtattggatgcctgattgcagttcaactccaaactcagttggaccagctgatcagtgtcttcagtatTACCACAAGCTACTGGGCAGATGTGTGGACACGACAGCTATGAGCCAGACTTGGGACGTTTGGTTTTTAGCAGGTGGAGAGACCGTCTGGgcagcagaaacaagacaactaatcatatttagatacaatcaaatgtccaaaccatctctgagtgaatgacatcaaggaaacaggatcaaaagatcattcattatagaccgtttcatagTTGGTTATATTTTTCAGGTCATTCTGTTCTCCTGGTTGTGAGCATGTGCAGAGGCtgtatttgtcagtgttaaaagactatccagacatacaagcagccgacaaagagttctggagcaggacagacagggcagcacggtggcgcagagggtagcacgtttgcctcacagcaagaaggtcgctgcttcgagcttcggctggATTGGTGTACGCTGATGGTCTGCTGAGAATTCTCCGGAGTTGAAGGGATCCTCCTGTCAGACAACCTCTCCAAAGTACAATAGGACTAggttcccactacaaggattagatttggctactgcagtcccggtttgggccagcctcacttgtgaagactaaagatgaagacaacatacaagaacaatttagaggatggcgacacactttttattccacctatatatccccttttatgtgtaagcaaaattccacaagataaaacaaaactaaatgacaggttgtttcttttaattttatcggttttcttggaacattgtacacaatttacaaccagttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataggtcagagcaagaaaatgttatgttttcttctggagaaagtcttatttcttttatttatattttagttttgaattaaaaaaaaaaaacattttaaggtcaatattatcagcctctttaagcaatttttttcgactgtctacagaacaaaccatcgatatacaataacttgcctaattaccctaacctgcctagttaagcctctaaatgtcactttaagctgtatagaagtgtcttgaagaatatctagtcaaatattatttactcagttattagaaatgagttattaaaactattgtgattagaaatgtgttaaaaaatatttccgttaaacagaaattaagggattatatatatatatatatatatataatcccttaatttctgtttaacggaaatatttttatatacaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatagaatgacaaaatctgttttgtgtcgtgcattagtttgcttaaaaaaactggttatctctgagaaagtattgttattttataatattgatGTGTTATTAGTTCATAGGAGATTTCAAATTGTTGaatgccatttataaaaaaaattgtactacagactttaataagattttatcagacaattattttaatttgtatgattttatttactactgtaaatattgtttgcttggtatttattttgtgtttgtgttctcttttattattgtaactccctgaagaaagtcttttggatactgaacacatgactggaattatcttgtattttaaaattatagtcttggaaatatgcattttctttaacactatttaagaaattataagcattataacatgtgcttacacacgttatttgtgtttttactatagtaaactatagtcACCCTTAGTGTACATCTTTTGAAGTACTTGTAAATATTCCTATGGTCTTAATATAAATGCTGCAATgaactttgtatttaaaatctttattgcacAGTAGCTTAGCCATGGTTATAGTAcaacttgttggttttgttttaaacgtggtggttatgtgtgataaaagtatgttaatctatttgtatgtttgtgaaaatattaataaatcttcaactgtta

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000138683

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042361 lncRNA downstream 17807 13668985 ~ 13693627 (-) True XLOC_020992
TCONS_00042360 lncRNA downstream 61830 13638850 ~ 13649604 (-) True XLOC_020991
TCONS_00041944 lncRNA downstream 103871 13606281 ~ 13607563 (-) True XLOC_020990
TCONS_00041276 lncRNA downstream 280130 13422568 ~ 13431304 (-) False XLOC_020988
TCONS_00041275 lncRNA downstream 280130 13422568 ~ 13431304 (-) True XLOC_020988
TCONS_00042362 lncRNA upstream 559349 14275746 ~ 14298602 (-) False XLOC_021001
TCONS_00041301 lncRNA upstream 559426 14275823 ~ 14295103 (-) True XLOC_021001
TCONS_00042363 lncRNA upstream 583403 14299800 ~ 14301873 (-) True XLOC_021002
TCONS_00042364 lncRNA upstream 616053 14332450 ~ 14334135 (-) True XLOC_021004
TCONS_00042365 lncRNA upstream 1048601 14764998 ~ 14773881 (-) False XLOC_021009
TCONS_00041279 mRNA downstream 61846 13638586 ~ 13649588 (-) False XLOC_020991
TCONS_00041277 mRNA downstream 167190 13458735 ~ 13544244 (-) False XLOC_020989
TCONS_00041278 mRNA downstream 245188 13462984 ~ 13466246 (-) True XLOC_020989
TCONS_00041273 mRNA downstream 361078 13276693 ~ 13350356 (-) False XLOC_020987
TCONS_00041274 mRNA downstream 361194 13282477 ~ 13350240 (-) False XLOC_020987
TCONS_00041287 mRNA upstream 129733 13846130 ~ 13857729 (-) False XLOC_020994
TCONS_00041288 mRNA upstream 130739 13847136 ~ 13851297 (-) True XLOC_020994
TCONS_00041291 mRNA upstream 367332 14083729 ~ 14115292 (-) False XLOC_020997
TCONS_00041292 mRNA upstream 367639 14084036 ~ 14115316 (-) False XLOC_020997
TCONS_00041294 mRNA upstream 411075 14127472 ~ 14128716 (-) True XLOC_020998
TCONS_00041270 other downstream 599112 13101736 ~ 13112322 (-) True XLOC_020984
TCONS_00041266 other downstream 776845 12933485 ~ 12934589 (-) False XLOC_020979
TCONS_00041252 other downstream 1085329 12617149 ~ 12626105 (-) False XLOC_020970
TCONS_00041253 other downstream 1085355 12624266 ~ 12626079 (-) False XLOC_020970
TCONS_00041251 other downstream 1100133 12607333 ~ 12611301 (-) False XLOC_020970
TCONS_00041289 other upstream 229556 13945953 ~ 13946067 (-) True XLOC_020995
TCONS_00041290 other upstream 303207 14019604 ~ 14019722 (-) True XLOC_020996
TCONS_00041293 other upstream 371956 14088353 ~ 14089062 (-) True XLOC_020997
TCONS_00041297 other upstream 506724 14223121 ~ 14247242 (-) False XLOC_021000
TCONS_00041309 other upstream 976715 14693112 ~ 14693228 (-) True XLOC_021008

Expression Profile

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