RNA id: XR_005035615.1


Basic Information

Item Value
RNA id XR_005035615.1
length 3671
RNA type mRNA
GC content 0.43
exon number 28
gene id LOC110538558
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 58454343 ~ 58499967 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATTATCATCAATCTTGACTTTGCAGTTGGTCCTTCTAGCAGAAACCGCTCAGTCATGCCTCCATGGCAAAACTCATGCCAATGAATGTAAACCTGCATCACAACATGACAAAGAACAGCCACACCTACAGTATACCCATACTGCTGTACTTCTTTCAACACCACATAGTCTTGTTTTTCAGTGTGTTTTCTTGCTAGAGGGCCGTGTCAGTAGCACAGAATATATATTTGCTGAACATTGCCTTTATGTGTAAAGTCTCATGGCATCATTTGATTTCGTCAGAGACAAATTAACTGAGTGGAACCTCAGTGACTTGATTCAGAGGTTTGAAGATGAAGAAATTGATGAAGAAAGTTTCCTCTTCCTTAAGGAGAAAGACTTCATCAACTTGATTCCAAAAATAGGACCAAGGTCTAGATTTAGAAAACAACACAAAGCATTTCTCAAGAAACAGAAGCAGCCCGATAACGATAAGAACATTCAAGCGGCCACGTGGTCATCAGTATCCATTAAGGCCTCCAAGAGTTCCTCAGAAAATGTTACTGGTGAGATGGTCAACCAAGAGTCTTGTCAAAAGGCCATCATAAAACCCAGAAATCAACCTCCTAAACAAGCAGAGACTAAAAGGTCATTGGTTAAACTCTTAGGTACAGGAAGTGTGCCCACAACGAACACCTCTGGAATGGGGAAAACAGTGTTTGACCAGAGTGAACCCTCGACCAGTAAAATACCCCCTCTTCAAGTGAATATCCCAAGCAAAAGGAAATCTGATGAGGCCcatgcaaacaaacaaacaaagaaacgACAACGTGTTGCTGCGTCCAGAATAACTGAGACATTTGAAACTGAAACCAAGACAGAGGTGAAGAAGATCATGCAACGTATCAAAAGCAAACTTGATGATCTGCCTTCTACGAAACTCATTGACTTCCTCAGAGGTAAAATCCAAACTTTGGAGAAAGACAAAAAAGAGATAGTGGCTGTTTTTGGGAAGACTAGAGCTGGTAAGAGCTTCTTGATTAACACCATCTTGGGTGAGACGACATTGCTGCCCTCTGGAAACCAAGGGGCATGCACCTCGGTCATGATTCAGGTGGAGGCCAATATGACAGACTCGGACTCTAAATACATCGCAGAGATTGAGTTCATGACAGAGGAGggATGGAAAGAGGATGGAAATGATGAAGACAAGGAAAGGGATGACgacgatgacgatgatgatgaaaAGATATCAGCTTTGTATGGAAAAGATGGACGTGGGGCAACCTTAGAAGAACTAATGGACAGAAAGCACTTCAGAGAAATTCCAGAGTTTCGTTTATCAGTCAAGAAAATATTTGTATGTGACACAGCAAAACAACTCTCTAAAAAGATCACTTGTTACACACGGAGTGATACATTTAAAAGACGGTATTGGCCGCTTGTGAAGTGTATAACCATCAAGGTGCCAAACTCCAAAGACCTGCTGGAGCATGTTGTGCTGGTTGATCTTCCAGGCAATGGAGACTGCAACAAGAGCAGAGATGAGATGTGGAAATTGTTTGTTGGAAACTGCTCTGCTGTGTGGATTGTGAGCGACATTGCAAGAGCAACTTCAGAAAAGGAATCTTGGGAGATTTTAAACAGCACCGTTAGCCTCTTTGGACCTGGTGGAGAATGTCGAAGCATCAGTTTCATCTGCACCAAGACAGACGACATTGAGGAGAATCAAAAGGCTGATGCACGTACTTGTATTTTGCGCAGAAATGAAACAACCAAGAGGCAAGTGAGGGATAaattcaacaaacaaaaaaaagttaaGAAACACTTCAGTGGGGGAAAGGATTTCCTTCAGGTGTTTACTGTGAGTTCCAAGGAATACCAAAAGGAAAAGCATTTGCAACAAGAAGAGACAGAAATACCCAAACTTCAGGAATTTCTCAGAAATCTCAATGATCGTCGCACAAAGACTTCAGTTTATGTTTCTGGAGCCTATGGGATCCTCTCTTTGATACACGGAGCCAAAAGCAGCGACATGACAGACAGCAAAGAAGAGGTGTGCCAGGTTCTGGAACAGAGGCTCAAGGACGAGATCAAGTCCATTGGTCAAACTATGGATGAGGCTTATGAGACTTTTGAACGATGCCTCTCAGAAGGAGTTCGACAATCAGAAGAATCATGCGAGAAATTAATGAATAAAGTGATAGCACCAAGAGGGAAAAAAGCTAGTGGATATCAAGTAGTGAAGTCTTTATGCAAGAATGGCGGCGTTCACAAACCAAAAGGGAAAAAGGAAATGAGAAGGGAACTAAACCTTAATGAGAGTTTAGCCTCACGTATGAGAAGTCTCATTGATGAACAGTTCAAGATACATTTCCCAAACGAGGGCAAACATGGCCCAATCAGGGAGCAGATTGATACATTCACCCTTGACACAAACAGCTTGTTTCGGAAGCACCCAGAAATGTCACTACATCTGATATTCCTCAAGACCGAGGAAACTGAATTCAAGGCAAAACTAATCTGTGACCTCCgcgagaagaagaaaaaaatctaCTCCACTTTAACCGAGTCAATCAAGGACTCCATGCATCGATGCTATATAAGGGCATCAGAGCATACAGGAAAAGATTCTCTGAAAAGGATGAAAGATGATTTACATCAGCACATGAAGAATAACAACATTTTCCAGAAGGCCAAGGAAGATATGCTGGGTGGTTTAATAAACCTGAAGGATCACATCATGATGCAACTGAAGTGTAAACTACAAGAATCAATGGATCTCTCACTCAAGACCCCCAACAGCTCGTTCCTCCCAGATGATGTCACTGTGGAGTATAACAAGATGAAGATGTACTATGAGAAACTGATGGGTTGCTCTAGTACAGTACAAATCACTCCAAGACTGGATTTACACACAAAAAGTATCACATTTGAATCACAGTCTGGGAATGGTAGGAAGCGTGTGCAGGTGTCAACAAGTGTAACAATGTTAAATCCTGAGATTGTCAAAGATCTTACAACACATGACCGCAAGCCTACGTATAGGCTTCAATGCCCAAAGGCAGGTCTTTTCCAGTGCCGTTCCACTGGTCTGGTGTTTCtgatggaagggaagggagatGTGGTTTACAAGGTGACTCAATGGGACAGGAGCCTCCTGGGCTCCATGACACCAGCAGGACCCCTATTCAGCATTGACTGTCCTGAGCAGTCTGTCTGCAAACTGCATCTCCCGCACTGTATGTGTGATGGGATGTGTTCTCCTTCCTCCCGGTCCGAAGCCAGGTGCTGCTGTTCCTGCGACCACAAGGGAACAGACCACAGAAGCGCATACTGAATGTTATTTTGTTGCCCAAGAATGTGCCACTTTGTGAGGTGGAATACCAACAGAGGGGGAGTACTTTCATTCAAACCAGCTCCAACTGCACATTGACTCCTAGAGGAAAATATGGCCTCTGCTGTGAGCTGGTGGCAAATTTTAGCATACAGCCAAAAAGTGGGCAGTTAGACTATGACTACAGCCCAAACTTCCACCCCACATTTCAGGTGTTTTTAGACTGCATGTCGGGTGCGGAGAACATCAGACTGAGTCTTTTAGACAGAGGAAGTAACGACCAAAGAGTGTGGGAGTCTCTAATTCCAACAGATTTTGAACCACCTCAAGTCAGTCCGATCAACCCTCATCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1358807 lncRNA downstream 12377 58446718 ~ 58447869 (-) False G1191186
TU1358808 lncRNA downstream 12377 58446718 ~ 58447869 (-) True G1191186
TU1358786 lncRNA downstream 36689 58418896 ~ 58423557 (-) True LOC110486946
TU1358797 lncRNA downstream 51844 58407816 ~ 58408402 (-) True G1191176
TU1358795 lncRNA downstream 53710 58406331 ~ 58406536 (-) True G1191174
TU1358809 lncRNA upstream 10574 58510541 ~ 58511423 (-) False G1191187
TU1358810 lncRNA upstream 10574 58510541 ~ 58511423 (-) True G1191187
TU1358871 lncRNA upstream 67775 58567742 ~ 58568292 (-) True G1191230
TU1358910 lncRNA upstream 206778 58706745 ~ 58707472 (-) False G1191265
TU1358911 lncRNA upstream 206778 58706745 ~ 58707672 (-) False G1191265
XM_036941710.1 mRNA downstream 34193 58372669 ~ 58426053 (-) False LOC110486946
XM_036941708.1 mRNA downstream 36686 58372669 ~ 58423560 (-) False LOC110486946
XM_036941711.1 mRNA downstream 36686 58372669 ~ 58423560 (-) False LOC110486946
XM_036941706.1 mRNA downstream 40657 58372669 ~ 58419589 (-) False LOC110486946
XR_005035616.1 mRNA upstream 4783 58504750 ~ 58507829 (-) True LOC110538556
XM_036941722.1 mRNA upstream 61713 58561680 ~ 58588525 (-) False LOC110514412
XM_036941723.1 mRNA upstream 61713 58561680 ~ 58588525 (-) False LOC110514412
XM_036941719.1 mRNA upstream 88811 58588778 ~ 58603975 (-) False LOC110486955
XM_036941720.1 mRNA upstream 88812 58588779 ~ 58603974 (-) False LOC110486955
TU1358104 other downstream 466222 57966137 ~ 57994024 (-) False G1190628
TU1358103 other downstream 466222 57991901 ~ 57994024 (-) True G1190628
TU1357843 other downstream 753456 57702536 ~ 57706790 (-) True LOC110486915
TU1357845 other downstream 758422 57699251 ~ 57701824 (-) False LOC110486915
TU1357787 other downstream 961091 57495988 ~ 57499155 (-) True G1190405
TU1358845 other upstream 87358 58587325 ~ 58588526 (-) True LOC110514412
TU1358844 other upstream 96809 58596776 ~ 58602232 (-) True LOC110486955
TU1358947 other upstream 259756 58759723 ~ 58762086 (-) True G1191298
TU1358988 other upstream 368096 58868063 ~ 58868971 (-) True G1191335
TU1359914 other upstream 406186 58906153 ~ 58909232 (-) True G1192082

Expression Profile