RNA id: TCONS_00043303


Basic Information

Item Value
RNA id TCONS_00043303
length 545
lncRNA type retained_intron
GC content 0.48
exon number 2
gene id XLOC_021842
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 35402697 ~ 35498518 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TggagtgtgtgtgcttgtgtgtgtgtgtgcgtgtttgtgtgtggaagGGACGGTTTGGTTCTCTGGCCAGAGGGACTGATCTGGTTGAAAAGAGGCTCTGCTGAGATGTTCTTCCGCATTCCTCTCCTGACACCCGGATACATTCGATACCTGCAGACTCAGGCAGCGCGGACTGGTCTGCAGACGGAGGGCCCTGTCGTACCCAGATTTGCCATGCTGTTGGGCCTTCTGGGTATTGGGATGTCAGGATACAGCTCTCGACAGCTGACCCTACACTACAAACCATCGCCACATCTCCTGCGGTGAAACACAAAGAGAAAACGCACCCATTTTGACTAAAGGTGCaacatttcttcaacacattccAACAACATCAGTATTACCAGGCAACCACATCATGCTGAAGTTTGTGGTCTTGCTTTGGTTGCGAGGATGGCCGATCTTCAACCAAGCCTTTCCAAACGTATTCTCTGGCAACAATTTGATTTAAGTTTTAGAATCTAGGTAAAATGGGTCTTTCTACGTGCTATCTCAATGTACAAATA

Function

GO:

id name namespace
GO:0007283 spermatogenesis biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1581 Predicted to be involved in spermatogenesis. Predicted to be active in cytosol and nucleus. Orthologous to human TDRP (testis development related protein).

Ensembl:

ensembl_id ENSDART00000171686

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00043301 lncRNA upstream 195518 35195740 ~ 35208386 (+) True XLOC_021841
TCONS_00044861 lncRNA upstream 416541 34849872 ~ 34987363 (+) True XLOC_021838
TCONS_00043299 lncRNA upstream 430763 34849715 ~ 34973141 (+) False XLOC_021838
TCONS_00043304 lncRNA downstream 16759 35426398 ~ 35466441 (+) False XLOC_021842
TCONS_00044866 lncRNA downstream 75255 35484894 ~ 35487575 (+) True XLOC_021843
TCONS_00044867 lncRNA downstream 78315 35487954 ~ 35498518 (+) False XLOC_021842
TCONS_00044868 lncRNA downstream 79879 35489518 ~ 35498165 (+) True XLOC_021842
TCONS_00044678 lncRNA downstream 147551 35557190 ~ 35560512 (+) True XLOC_021845
TCONS_00043300 mRNA upstream 378787 34990693 ~ 35025117 (+) True XLOC_021840
TCONS_00043298 mRNA upstream 650093 34321237 ~ 34753811 (+) True XLOC_021836
TCONS_00043292 mRNA upstream 1218885 34047413 ~ 34185019 (+) False XLOC_021835
TCONS_00043306 mRNA downstream 41411 35451050 ~ 35498276 (+) False XLOC_021842
TCONS_00043307 mRNA downstream 95185 35504824 ~ 35537727 (+) False XLOC_021844
TCONS_00043308 mRNA downstream 95196 35504835 ~ 35537363 (+) True XLOC_021844
TCONS_00043309 mRNA downstream 241132 35650771 ~ 35664505 (+) False XLOC_021846
TCONS_00043311 mRNA downstream 262903 35672542 ~ 35690336 (+) False XLOC_021847
TCONS_00043297 other upstream 1218890 34053506 ~ 34185014 (+) True XLOC_021835
TCONS_00043296 other upstream 1218895 34047563 ~ 34185009 (+) False XLOC_021835
TCONS_00043293 other upstream 1350195 34047416 ~ 34053709 (+) False XLOC_021835
TCONS_00043288 other upstream 1401031 34002757 ~ 34002873 (+) True XLOC_021833
TCONS_00043276 other upstream 1573714 33828665 ~ 33830190 (+) True XLOC_021826
TCONS_00043305 other downstream 16938 35426577 ~ 35469859 (+) False XLOC_021842
TCONS_00043331 other downstream 678452 36088091 ~ 36088196 (+) True XLOC_021861
TCONS_00043339 other downstream 720362 36130001 ~ 36130092 (+) True XLOC_021866
TCONS_00043345 other downstream 898022 36307661 ~ 36310418 (+) False XLOC_021870
TCONS_00043352 other downstream 1081475 36491114 ~ 36491234 (+) True XLOC_021877

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU235505 True 638 lncRNA 0.51 2 NC_048566.1 95624090 ~ 95625006 (-)
tiger barb (Puntius tetrazona) TU235505 True 946 lncRNA 0.43 2 NC_056721.1 18670515 ~ 18672766 (-)