Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00043307 |
| length | 1243 |
| RNA type | mRNA |
| GC content | 0.40 |
| exon number | 6 |
| gene id | XLOC_021844 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007134.7 |
| NCBI id | CM002907.2 |
| chromosome length | 46223584 |
| location | 35504824 ~ 35537727 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0048793 | pronephros development | biological_process |
| GO:0006470 | protein dephosphorylation | biological_process |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0003993 | acid phosphatase activity | molecular_function |
| GO:0004725 | protein tyrosine phosphatase activity | molecular_function |
| GO:0004726 | non-membrane spanning protein tyrosine phosphatase activity | molecular_function |
| id | description |
|---|---|
| ko00730 | Thiamine metabolism |
| ko00740 | Riboflavin metabolism |
| ko04520 | Adherens junction |
| ko05208 | Chemical carcinogenesis - reactive oxygen species |
| ko01009 | Protein phosphatases and associated proteins |
| id | description |
|---|---|
| ZDB-GENE-050327-12 | Predicted to enable protein tyrosine phosphatase activity. Acts upstream of or within pronephros development. Predicted to be located in cytoplasm. Is expressed in gut and liver. Human ortholog(s) of this gene implicated in several diseases, including attention deficit hyperactivity disorder; conduct disorder; diabetes mellitus (multiple); diabetic retinopathy; and obesity. Orthologous to human ACP1 (acid phosphatase 1). |
| ensembl_id | ENSDART00000082647 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00044867 | lncRNA | upstream | 6306 | 35487954 ~ 35498518 (+) | False | XLOC_021842 |
| TCONS_00044868 | lncRNA | upstream | 6659 | 35489518 ~ 35498165 (+) | True | XLOC_021842 |
| TCONS_00044866 | lncRNA | upstream | 17249 | 35484894 ~ 35487575 (+) | True | XLOC_021843 |
| TCONS_00043304 | lncRNA | upstream | 38383 | 35426398 ~ 35466441 (+) | False | XLOC_021842 |
| TCONS_00044865 | lncRNA | upstream | 88390 | 35403886 ~ 35416434 (+) | False | XLOC_021842 |
| TCONS_00044678 | lncRNA | downstream | 19463 | 35557190 ~ 35560512 (+) | True | XLOC_021845 |
| TCONS_00043310 | lncRNA | downstream | 113080 | 35650807 ~ 35661553 (+) | True | XLOC_021846 |
| TCONS_00044869 | lncRNA | downstream | 156545 | 35694272 ~ 35702721 (+) | False | XLOC_021848 |
| TCONS_00044679 | lncRNA | downstream | 158165 | 35695892 ~ 35699473 (+) | True | XLOC_021848 |
| TCONS_00044870 | lncRNA | downstream | 185711 | 35723438 ~ 35727522 (+) | False | XLOC_021851 |
| TCONS_00043306 | mRNA | upstream | 6548 | 35451050 ~ 35498276 (+) | False | XLOC_021842 |
| TCONS_00043300 | mRNA | upstream | 479707 | 34990693 ~ 35025117 (+) | True | XLOC_021840 |
| TCONS_00043298 | mRNA | upstream | 751013 | 34321237 ~ 34753811 (+) | True | XLOC_021836 |
| TCONS_00043292 | mRNA | upstream | 1319805 | 34047413 ~ 34185019 (+) | False | XLOC_021835 |
| TCONS_00043309 | mRNA | downstream | 113044 | 35650771 ~ 35664505 (+) | False | XLOC_021846 |
| TCONS_00043311 | mRNA | downstream | 134815 | 35672542 ~ 35690336 (+) | False | XLOC_021847 |
| TCONS_00043312 | mRNA | downstream | 147029 | 35684756 ~ 35690182 (+) | True | XLOC_021847 |
| TCONS_00043313 | mRNA | downstream | 171003 | 35708730 ~ 35711398 (+) | True | XLOC_021849 |
| TCONS_00043314 | mRNA | downstream | 175830 | 35713557 ~ 35716519 (+) | False | XLOC_021850 |
| TCONS_00043305 | other | upstream | 34965 | 35426577 ~ 35469859 (+) | False | XLOC_021842 |
| TCONS_00043302 | other | upstream | 43815 | 35402697 ~ 35461009 (+) | False | XLOC_021842 |
| TCONS_00043297 | other | upstream | 1319810 | 34053506 ~ 34185014 (+) | True | XLOC_021835 |
| TCONS_00043296 | other | upstream | 1319815 | 34047563 ~ 34185009 (+) | False | XLOC_021835 |
| TCONS_00043293 | other | upstream | 1451115 | 34047416 ~ 34053709 (+) | False | XLOC_021835 |
| TCONS_00043331 | other | downstream | 550364 | 36088091 ~ 36088196 (+) | True | XLOC_021861 |
| TCONS_00043339 | other | downstream | 592274 | 36130001 ~ 36130092 (+) | True | XLOC_021866 |
| TCONS_00043345 | other | downstream | 769934 | 36307661 ~ 36310418 (+) | False | XLOC_021870 |
| TCONS_00043352 | other | downstream | 953387 | 36491114 ~ 36491234 (+) | True | XLOC_021877 |
| TCONS_00043358 | other | downstream | 1252496 | 36790223 ~ 36790332 (+) | True | XLOC_021884 |
