RNA id: TCONS_00044678


Basic Information

Item Value
RNA id TCONS_00044678
length 833
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id XLOC_021845
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 35557190 ~ 35560512 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCTTTACCTGTCAATTGTTTTCCTGCAGATGTGTGGTGCCGAGTGACAAAATGAAAGACGTGCTGTTTGCTGTTGCAACAGGTTTTTTGTTGTTGCGTATAGTTCAAACAACCCTGCCAAATGCGttgtataattgtgtgtgtgtgtgtgtgtttgtatgttcacAGTTTCCAGTGGGGTGGAGCTTCAAGGAAGGGGCGATACGCATTCCTCATCAAAAAGAAAATAGTTATGAGGTGTAGTGATGGATCTGAGTGTAGAGGTCTTGTTTATATGCACTTGCGCCGAGCGTTTATCATGGCGCATCTTCATATTATATTTTACCGACTGCTAGTTTCTCCTGAATGGACTTTTTGGACTATAAAGTCTCCAGTGGGACGGAGCTTCAAGGGAGGGCGAAATGCATTCCTCATCAAAAAGAAAATAGTTATGATATGAAATGATGGAGCCGAGTGTAGAGGTCTTGTTGACATGCTCTCGCTGAGCTGTTGTTGTAAGACTGGCAAACAGCAGCCACGGTTTGCATGGGAAGCTTCTGAACGAGTCAGGGATGTTTCTCTCTTGTTCTGAAATGTCTGCAGAGGTTACGTGAGGACAACAGCTGCATGCCAAAATCAGCATGCAAAGAGAGAAGTGTTACTGATAACCTGTGGAGGAGAGGTGTTAAAGATGAGGAGATCTCAGGCATATCAGtctctctctatctttctctttatctgtccatctatcacgTATTCATCTTCTCTTTCAGGAATAGGGGATTAATAGAgctttgaaataaatgtaaataatgtcagcctcaaaatgagtgtaatttttttttaaattgagc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044867 lncRNA upstream 58672 35487954 ~ 35498518 (+) False XLOC_021842
TCONS_00044868 lncRNA upstream 59025 35489518 ~ 35498165 (+) True XLOC_021842
TCONS_00044866 lncRNA upstream 69615 35484894 ~ 35487575 (+) True XLOC_021843
TCONS_00043304 lncRNA upstream 90749 35426398 ~ 35466441 (+) False XLOC_021842
TCONS_00044865 lncRNA upstream 140756 35403886 ~ 35416434 (+) False XLOC_021842
TCONS_00043310 lncRNA downstream 90295 35650807 ~ 35661553 (+) True XLOC_021846
TCONS_00044869 lncRNA downstream 133760 35694272 ~ 35702721 (+) False XLOC_021848
TCONS_00044679 lncRNA downstream 135380 35695892 ~ 35699473 (+) True XLOC_021848
TCONS_00044870 lncRNA downstream 162926 35723438 ~ 35727522 (+) False XLOC_021851
TCONS_00044871 lncRNA downstream 162930 35723442 ~ 35727522 (+) True XLOC_021851
TCONS_00043307 mRNA upstream 19463 35504824 ~ 35537727 (+) False XLOC_021844
TCONS_00043308 mRNA upstream 19827 35504835 ~ 35537363 (+) True XLOC_021844
TCONS_00043306 mRNA upstream 58914 35451050 ~ 35498276 (+) False XLOC_021842
TCONS_00043300 mRNA upstream 532073 34990693 ~ 35025117 (+) True XLOC_021840
TCONS_00043298 mRNA upstream 803379 34321237 ~ 34753811 (+) True XLOC_021836
TCONS_00043309 mRNA downstream 90259 35650771 ~ 35664505 (+) False XLOC_021846
TCONS_00043311 mRNA downstream 112030 35672542 ~ 35690336 (+) False XLOC_021847
TCONS_00043312 mRNA downstream 124244 35684756 ~ 35690182 (+) True XLOC_021847
TCONS_00043313 mRNA downstream 148218 35708730 ~ 35711398 (+) True XLOC_021849
TCONS_00043314 mRNA downstream 153045 35713557 ~ 35716519 (+) False XLOC_021850
TCONS_00043305 other upstream 87331 35426577 ~ 35469859 (+) False XLOC_021842
TCONS_00043302 other upstream 96181 35402697 ~ 35461009 (+) False XLOC_021842
TCONS_00043297 other upstream 1372176 34053506 ~ 34185014 (+) True XLOC_021835
TCONS_00043296 other upstream 1372181 34047563 ~ 34185009 (+) False XLOC_021835
TCONS_00043293 other upstream 1503481 34047416 ~ 34053709 (+) False XLOC_021835
TCONS_00043331 other downstream 527579 36088091 ~ 36088196 (+) True XLOC_021861
TCONS_00043339 other downstream 569489 36130001 ~ 36130092 (+) True XLOC_021866
TCONS_00043345 other downstream 747149 36307661 ~ 36310418 (+) False XLOC_021870
TCONS_00043352 other downstream 930602 36491114 ~ 36491234 (+) True XLOC_021877
TCONS_00043358 other downstream 1229711 36790223 ~ 36790332 (+) True XLOC_021884

Expression Profile

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