RNA id: TCONS_00043309


Basic Information

Item Value
RNA id TCONS_00043309
length 2826
RNA type mRNA
GC content 0.48
exon number 10
gene id XLOC_021846
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 35650771 ~ 35664505 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTTAAAACATTGTCCTTCTCAGTAATGGCGGCTTCGTTCCCTTCGCCTtcgcaaaataacaataaatggtACTTCACGCGCGAACAAATCGAAAACAGTCCATCTCGCCGAGCGGGACTTGATCCCGACAAAGAGCTCTCGTACCGACAGCAAGCTGCTAACCTGCTGCAGGACATGGGACAGCGGCTCAACGTCTCACAACTCACAATTAACACTGCCATTGTGTATATGCATCGCTTTTACATGGTCCAGTCCTTTACTCGCTTCCACCGGAATGTGATTGCTCCTGCAGCTCTGTTTTTAGCAGCGAAGGTGGAGGAACAGCCCCGTAAACTGGAGCATGTGATTAAGGTGACCCATGCATGTCTCAATCCTCAGGACCCATCACCGGACACCAGGAGTGATACATACCTGCAACAAGCCCAAGACCTGGTCATTCTTGAGAGCATAATACTCCAGACCCTGGGTTTTGAGATCACCATTGATCATCCTCACACACATGTTGTCAAGTGTACTCAGCTTGTGCGAGCGAGTAAGGATTTGGCTCAGACTTCATATTTCATGGCAACAAACAGTCTTCACTTGACTACGTTCTGTCTGCAGTACAGTCCACCAATTGTAGCTTGTGTTTGTATTCATCTGGCCTGTAAATGGTCCAACTGGGAGATTCCCGTTTCCACAGATGGCAAACACTGGTGGCAGTATGTTGACCCCACTGTGACTCTTGAGCTATTGGATGAGCTCACTCATGAGTTCCTGCAGATCTTGGAAAAGACACCCAGCCGCTTAAAACGCACCAGAAACTGGAAAGCTGCAGGTCAAACTGCTAAGAAATCGAAAGTGCAGGATGGCGATCAGTCTGAAGCCATCATGAACATGATCTCAATGTCGTCGTCCGACAGCACATTGGCAGGACTGACGAGCCTCTCCGCTCCGCCCACCGGTTCCTCCATGGACTCTTGTGCAGACGAGCACAGCGCCGCAGCCTCCGCTCAACACTGGCAGCCTCCCAGCAAAGAGCAGCCCACTGCCAACGAGCTCCACGCACCCGCCAAAGTCTCTCTGAGCGAGTATCGGGCCAAACATGCGGATGAGTTGGCGGCACAGAAGAGGGAGCTGAAGAACATGGAGGCAAGTGTGAAGCAGGGATACGCCACTGCCGCCCAGGCCCTAATGAACCAGCAGAGGAAAGATaaacaccatcaccaccagcagACCAGCTCCTCAGACACCAACAACCCATCCCCAATCGTCTTGAAGATCCCGCTGGATGAGCGATCGGAGAGAAGTTCCATAAAAATGCGCTTACCTGTGCCAGGTCAATCCGGCGGGGGTCACAGCCACAGCAGTGGCAGCAGCAGCCGGGGATCAGACCAGGACATCAAAGTGCGCATTCGGGTTCCAGACAGGCGAGGCGGATCTGGAGAAGACGGGAAAAGTCGCGAAAAACACAGAGAGCGATCcaaccaccaccaccatcatcaccaccaccaccaccactctTCCTCCTCCAGCGCCGGTTCCCTCTCAGCATCGTCTTCCTCATCCTCAGCACAAAAACACTCAGCCGGCTCTTCAGGAAGTAGCAAAAAGCTCTCAGGTGATTCAGTGCGGACGAGCTCTTCATCAATGTCGCGAAAACGAACCCACATGCCAGACCCTTCCTCCTCCAGCACCCACTCGTCCTCAAAAGTCAGCAAATCGTCCAGAAACTCATTTCAGTTGCCCACGCTCCCTGGATTGCCGTCTCATGTGATGCCCGACATCCTTCCCTCGCTGCACCATCAGGGAAACTATTCGCACTCCAAGACGGACAAAGCGGATACAAACGGTCACAACGCGGCCGGACAGTCGAACGAGTACCAGGACACGTTTGACATGTTGAACTCGCTGCTCAGTGCGCAGGGCGTCCAGCCGGCACAACCTCAGATATTTGACTACCGCTCTCAGTACGGAGAGTTTCGCTATAGCAGTGGCGCTCGCGGAGGAGCACAGCCGCCACCTTTACCCTCAGAACCACCTCCACCTCTGCCTCCATTGCCCAAATAAAGCGCCCTCGCATCATCCGTCCACACACGCTGATCAAATCAGTGCTTTCGGGAGTCCTGTGTGCGTCTAACTTTAGTGTGATGTCGCGTTTGACAGCAGAGTAATGTAAGGCAAAAAAAGCCCTAATGTTGTCTtgcgtctttgtgtgtgtgtgcgtgcgcaagCGAGTACGTTCACAACACCCCATCTGTGGCAATAATGTTAAAGTagaacaaaatattgcaaaaaaaaggcaaaaatgttatttattgaaacgagaaaaaaaataattgtacatACTACTATTTTTTGATGTCGTTCACTTTTATATCCGCGCTAACAGAAAAGCATAATGGAATTAAGGGTAATGTATTACTGAATGAGAGGGACTCGCggtcctctttaaaaaaaaaaaagtgtaacctTGAATGCAAAAATGGAAAATGTTCGCTAACAATATATATGTGTCTTTTTTATGGAGTATGGTATTTATTATTAGCCTTTTAAATCCATAGTTATTAGCAGTCGTTGCTTGAATGCGTCTCCAGACGAGATCTggatttatttttatactgttgtAAGTAAACCTACTTCCCAGTCTGTATTTACTTGATGTGTGTCATGAGAAAtggacacgcacacaaacacaaatcacCAATATTCGCATCATAATGTGTTCCTAAATTCACGAAtagtttcatttttgttttgtttggtaaaTATTTTTGCTTTCAACTTCTATTAATGGTGAAAATTGACgactatttaaaagaaaaaaacctaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0032786 positive regulation of DNA-templated transcription, elongation biological_process
GO:0005634 nucleus cellular_component
GO:0008024 cyclin/CDK positive transcription elongation factor complex cellular_component
GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity molecular_function
GO:0061575 cyclin-dependent protein serine/threonine kinase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6397 Predicted to enable cyclin-dependent protein serine/threonine kinase activator activity. Predicted to be involved in positive regulation of DNA-templated transcription, elongation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be part of cyclin/CDK positive transcription elongation factor complex. Predicted to be active in nucleus. Orthologous to human CCNT1 (cyclin T1).

Ensembl:

ensembl_id ENSDART00000005158

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044678 lncRNA upstream 90259 35557190 ~ 35560512 (+) True XLOC_021845
TCONS_00044867 lncRNA upstream 152253 35487954 ~ 35498518 (+) False XLOC_021842
TCONS_00044868 lncRNA upstream 152606 35489518 ~ 35498165 (+) True XLOC_021842
TCONS_00044866 lncRNA upstream 163196 35484894 ~ 35487575 (+) True XLOC_021843
TCONS_00043304 lncRNA upstream 184330 35426398 ~ 35466441 (+) False XLOC_021842
TCONS_00044869 lncRNA downstream 29767 35694272 ~ 35702721 (+) False XLOC_021848
TCONS_00044679 lncRNA downstream 31387 35695892 ~ 35699473 (+) True XLOC_021848
TCONS_00044870 lncRNA downstream 58933 35723438 ~ 35727522 (+) False XLOC_021851
TCONS_00044871 lncRNA downstream 58937 35723442 ~ 35727522 (+) True XLOC_021851
TCONS_00044872 lncRNA downstream 64750 35729255 ~ 35730062 (+) True XLOC_021852
TCONS_00043307 mRNA upstream 113044 35504824 ~ 35537727 (+) False XLOC_021844
TCONS_00043308 mRNA upstream 113408 35504835 ~ 35537363 (+) True XLOC_021844
TCONS_00043306 mRNA upstream 152495 35451050 ~ 35498276 (+) False XLOC_021842
TCONS_00043300 mRNA upstream 625654 34990693 ~ 35025117 (+) True XLOC_021840
TCONS_00043298 mRNA upstream 896960 34321237 ~ 34753811 (+) True XLOC_021836
TCONS_00043311 mRNA downstream 8037 35672542 ~ 35690336 (+) False XLOC_021847
TCONS_00043312 mRNA downstream 20251 35684756 ~ 35690182 (+) True XLOC_021847
TCONS_00043313 mRNA downstream 44225 35708730 ~ 35711398 (+) True XLOC_021849
TCONS_00043314 mRNA downstream 49052 35713557 ~ 35716519 (+) False XLOC_021850
TCONS_00043315 mRNA downstream 50069 35714574 ~ 35716392 (+) True XLOC_021850
TCONS_00043305 other upstream 180912 35426577 ~ 35469859 (+) False XLOC_021842
TCONS_00043302 other upstream 189762 35402697 ~ 35461009 (+) False XLOC_021842
TCONS_00043297 other upstream 1465757 34053506 ~ 34185014 (+) True XLOC_021835
TCONS_00043296 other upstream 1465762 34047563 ~ 34185009 (+) False XLOC_021835
TCONS_00043293 other upstream 1597062 34047416 ~ 34053709 (+) False XLOC_021835
TCONS_00043331 other downstream 423586 36088091 ~ 36088196 (+) True XLOC_021861
TCONS_00043339 other downstream 465496 36130001 ~ 36130092 (+) True XLOC_021866
TCONS_00043345 other downstream 643156 36307661 ~ 36310418 (+) False XLOC_021870
TCONS_00043352 other downstream 826609 36491114 ~ 36491234 (+) True XLOC_021877
TCONS_00043358 other downstream 1125718 36790223 ~ 36790332 (+) True XLOC_021884

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_02581454_02591012.mRNA True 2412 mRNA 0.52 9 CI01000001 2581314 ~ 2591012 (-)
bowfin (Amia calva) AMCG00008642 True 2054 mRNA 0.56 9 CM030126.1 7387052 ~ 7402820 (-)