RNA id: TCONS_00043311


Basic Information

Item Value
RNA id TCONS_00043311
length 2196
RNA type mRNA
GC content 0.45
exon number 12
gene id XLOC_021847
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 35672542 ~ 35690336 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGAAAGTCTTTAAAGTGCCAACAAAGTGACACAATGAAGCTATTCTCTACAATATTCATATTATCCAGTTTGTCCGGGGGATTAACAAGACAAGCTGACCGAAGCAACTCCAATTCCCGATTCAATCAGTATCAGACACTGAATACAAAGCGGTTCCCAGTTTGGAATGATGGAGACCCACGCTACAAAACCAGCTGGATGGGTGGCCAGCTGAAGTTTGATGTGGGAAATGATGCTCCTACCTTGACCGGTGCAAAAATCAGCTTCACCATTGACATCGTGTTCCCTCATAACCAGAAGGTCCTGCCTGATGGACAAGTTGTTTGGGCAAAAAACTGCACCATCAATGGCACACAGTTTCACGAAGGCGAGCCCGTGTATCCTGAGGAAAACTCATGGAACGCTGTGTCTCCAAATGCTCATCTCTTTTCCAGACAGGGAGACAAGCCACCTCCATATGTGTTTGTATGGAAAACCTGGGGCAAATACTGGCAGGTTTGCGACGGTCCTTCCTCTTCGCTGACCATCGACACTGATGATGTTCCTCTGGGCTCTTATATAATGGATGTTGTCATCTATCACTACAGGCAAAAAGACAGATTCATCCCCATTGGATTTGCATCCACACAGTTCTCGATCATTGACCAGATTCCCTTTGCGGTTTCTCTGACTCAGGTAAACGACAAAGACCAAGGTGATCACAAATTCGTCCAGAACAGAGCAGTGGCCTTCAGCATCACCCTTCACGACCCCAGTGAGTACTTGAGCAAATCTGACGTGACTTTCAACTGGAACTTCGGGGATGGCAGTGGCACTGTAATATCCAGGGAATCCACCGTCACACACACTTACATTGCATCTGGGGTCTTCAAGCCGCAAGTCGTCGTACAGGCAGCTATTCCAGATCCGTCTTGTTCAGGTCCACCGAATCCTCCAGTTGAAGGATCCACTGCCAACACCTTCACCTCTGAGAGCCCCAAACACCCCAGCGAACACCTCGCTACAGATCATCCTACCAGACATTTTTCAGCACCCTTTGTGAAATCCACACCTGTATCTGCAATGAAAACTGTTCCACCTGCACCTACAAATGGAGATCCATCAAAATCCAGCCTTGAGAGGCAGGTTGTTGATCTTGTACCTGAATTTAAGATGTCTGAAACACTGAATACTGTGACAAACACACCACTGAAGGCAACTGCCACAGACATGGTGATGGTGGAGGATGAGTCTATTGAAAACCAAGCCCATGTGTCGATAATAAAGCGTCAGGCCCCAAACATAAACGGCTGTGTGATTTACCGATATGGATCCTTCTCAACTGATATCGAGATTATCGaGGGCATTGAGAGTGTGCAGATCGTCCAGGTGGCTGTAGCTGATGGCTTTCTGCTAACAGAGATGGAGCAGAATGCTGTGGATTTCACCGTTTCTTGCCAAGGAAGCATCCCCACTGAAGTGTGCACTATAGTGTCGGATGCTGACTGTCATGCACCAGTTATGACCATCTGCAATGCCGTGAGCCCATCTTCAGATTGCCAACTCATCCTTCGTCATTTCTTCAATGACTCTGGAACCTTCTGCATTAATGTGTCCATGGCGAATGACGTCAGTATGGCTGTCACAAATGCCAGGGTTAACATAAACATAGCAGGTTCCAGGTTGACATCTGCAGGTGCCGCGGCCCTGTTGTTGGGGATCTTGACTGTCGTATCAGCAATGGCTGCTGTAGCTTTTGCGTATAAGCGTCTTAAAGGGTACCAAAGGCTGACTGAGGATCCAGTAGCATGCCAATCCAATGATTCCGGCGTGTGCTCAATGCCAGCGCTTTTCTGGAGCCTGATGAACCACCAGACGGTGGATCAGAAAAAAGGAGTAGTGTGAATTTTACTTTCGATGATGAAAAAATGTAGGTAGCATTGGCACTATTTTGAATAGCATTAAGAAATTTGAACCTTTTGTACCACTTTTCAATCTTTAATGTTTGAATTggattttgtattatttttgtacaCACATTTGACcccaaattgtttttttttctaccaaaAACTGTTAGTAAGTACAGCGTTCATACTTTAAACTTGAATTTAGAAAGGAAACTTTGGGCCAACAAAGCTTATTTGGTAAAGGACTTCTGGAACCCCATGCATTCATTTTTAACACTACtgaataaaatatcacaaaagcTGCTA

Function

GO:

id name namespace
GO:0032438 melanosome organization biological_process
GO:0042470 melanosome cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050912-2 Acts upstream of or within melanosome organization. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in melanosome. Predicted to be integral component of plasma membrane. Is expressed in optic vesicle; presumptive retinal pigmented epithelium; retina; and retinal pigmented epithelium. Orthologous to human PMEL (premelanosome protein).

Ensembl:

ensembl_id ENSDART00000046268

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00043310 lncRNA upstream 10989 35650807 ~ 35661553 (+) True XLOC_021846
TCONS_00044678 lncRNA upstream 112030 35557190 ~ 35560512 (+) True XLOC_021845
TCONS_00044867 lncRNA upstream 174024 35487954 ~ 35498518 (+) False XLOC_021842
TCONS_00044868 lncRNA upstream 174377 35489518 ~ 35498165 (+) True XLOC_021842
TCONS_00044866 lncRNA upstream 184967 35484894 ~ 35487575 (+) True XLOC_021843
TCONS_00044869 lncRNA downstream 3936 35694272 ~ 35702721 (+) False XLOC_021848
TCONS_00044679 lncRNA downstream 5556 35695892 ~ 35699473 (+) True XLOC_021848
TCONS_00044870 lncRNA downstream 33102 35723438 ~ 35727522 (+) False XLOC_021851
TCONS_00044871 lncRNA downstream 33106 35723442 ~ 35727522 (+) True XLOC_021851
TCONS_00044872 lncRNA downstream 38919 35729255 ~ 35730062 (+) True XLOC_021852
TCONS_00043309 mRNA upstream 8037 35650771 ~ 35664505 (+) False XLOC_021846
TCONS_00043307 mRNA upstream 134815 35504824 ~ 35537727 (+) False XLOC_021844
TCONS_00043308 mRNA upstream 135179 35504835 ~ 35537363 (+) True XLOC_021844
TCONS_00043306 mRNA upstream 174266 35451050 ~ 35498276 (+) False XLOC_021842
TCONS_00043300 mRNA upstream 647425 34990693 ~ 35025117 (+) True XLOC_021840
TCONS_00043313 mRNA downstream 18394 35708730 ~ 35711398 (+) True XLOC_021849
TCONS_00043314 mRNA downstream 23221 35713557 ~ 35716519 (+) False XLOC_021850
TCONS_00043315 mRNA downstream 24238 35714574 ~ 35716392 (+) True XLOC_021850
TCONS_00043316 mRNA downstream 69507 35759843 ~ 35782365 (+) True XLOC_021853
TCONS_00043318 mRNA downstream 156864 35847200 ~ 35951653 (+) False XLOC_021855
TCONS_00043305 other upstream 202683 35426577 ~ 35469859 (+) False XLOC_021842
TCONS_00043302 other upstream 211533 35402697 ~ 35461009 (+) False XLOC_021842
TCONS_00043297 other upstream 1487528 34053506 ~ 34185014 (+) True XLOC_021835
TCONS_00043296 other upstream 1487533 34047563 ~ 34185009 (+) False XLOC_021835
TCONS_00043293 other upstream 1618833 34047416 ~ 34053709 (+) False XLOC_021835
TCONS_00043331 other downstream 397755 36088091 ~ 36088196 (+) True XLOC_021861
TCONS_00043339 other downstream 439665 36130001 ~ 36130092 (+) True XLOC_021866
TCONS_00043345 other downstream 617325 36307661 ~ 36310418 (+) False XLOC_021870
TCONS_00043352 other downstream 800778 36491114 ~ 36491234 (+) True XLOC_021877
TCONS_00043358 other downstream 1099887 36790223 ~ 36790332 (+) True XLOC_021884

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_02570315_02577096.mRNA True 1927 mRNA 0.43 11 CI01000001 2569989 ~ 2577122 (-)