Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00043313 |
| length | 1537 |
| RNA type | mRNA |
| GC content | 0.53 |
| exon number | 4 |
| gene id | XLOC_021849 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007134.7 |
| NCBI id | CM002907.2 |
| chromosome length | 46223584 |
| location | 35708730 ~ 35711398 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0043066 | negative regulation of apoptotic process | biological_process |
| GO:0021634 | optic nerve formation | biological_process |
| GO:0007017 | microtubule-based process | biological_process |
| GO:0000226 | microtubule cytoskeleton organization | biological_process |
| GO:0000278 | mitotic cell cycle | biological_process |
| GO:0005856 | cytoskeleton | cellular_component |
| GO:0005874 | microtubule | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0003924 | GTPase activity | molecular_function |
| GO:0005525 | GTP binding | molecular_function |
| GO:0005200 | structural constituent of cytoskeleton | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-090507-4 | Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Acts upstream of or within negative regulation of apoptotic process and optic nerve formation. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Human ortholog(s) of this gene implicated in lissencephaly; lissencephaly 3; microcephaly; and visual epilepsy. Orthologous to human TUBA1A (tubulin alpha 1a). |
| ensembl_id | ENSDART00000009277 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00044869 | lncRNA | upstream | 6009 | 35694272 ~ 35702721 (+) | False | XLOC_021848 |
| TCONS_00044679 | lncRNA | upstream | 9257 | 35695892 ~ 35699473 (+) | True | XLOC_021848 |
| TCONS_00043310 | lncRNA | upstream | 47177 | 35650807 ~ 35661553 (+) | True | XLOC_021846 |
| TCONS_00044678 | lncRNA | upstream | 148218 | 35557190 ~ 35560512 (+) | True | XLOC_021845 |
| TCONS_00044867 | lncRNA | upstream | 210212 | 35487954 ~ 35498518 (+) | False | XLOC_021842 |
| TCONS_00044870 | lncRNA | downstream | 12040 | 35723438 ~ 35727522 (+) | False | XLOC_021851 |
| TCONS_00044871 | lncRNA | downstream | 12044 | 35723442 ~ 35727522 (+) | True | XLOC_021851 |
| TCONS_00044872 | lncRNA | downstream | 17857 | 35729255 ~ 35730062 (+) | True | XLOC_021852 |
| TCONS_00043317 | lncRNA | downstream | 79410 | 35790808 ~ 35798279 (+) | True | XLOC_021854 |
| TCONS_00043323 | lncRNA | downstream | 258031 | 35969429 ~ 35969745 (+) | False | XLOC_021856 |
| TCONS_00043311 | mRNA | upstream | 18394 | 35672542 ~ 35690336 (+) | False | XLOC_021847 |
| TCONS_00043312 | mRNA | upstream | 18548 | 35684756 ~ 35690182 (+) | True | XLOC_021847 |
| TCONS_00043309 | mRNA | upstream | 44225 | 35650771 ~ 35664505 (+) | False | XLOC_021846 |
| TCONS_00043307 | mRNA | upstream | 171003 | 35504824 ~ 35537727 (+) | False | XLOC_021844 |
| TCONS_00043308 | mRNA | upstream | 171367 | 35504835 ~ 35537363 (+) | True | XLOC_021844 |
| TCONS_00043314 | mRNA | downstream | 2159 | 35713557 ~ 35716519 (+) | False | XLOC_021850 |
| TCONS_00043315 | mRNA | downstream | 3176 | 35714574 ~ 35716392 (+) | True | XLOC_021850 |
| TCONS_00043316 | mRNA | downstream | 48445 | 35759843 ~ 35782365 (+) | True | XLOC_021853 |
| TCONS_00043318 | mRNA | downstream | 135802 | 35847200 ~ 35951653 (+) | False | XLOC_021855 |
| TCONS_00043319 | mRNA | downstream | 136140 | 35847538 ~ 35951653 (+) | False | XLOC_021855 |
| TCONS_00043305 | other | upstream | 238871 | 35426577 ~ 35469859 (+) | False | XLOC_021842 |
| TCONS_00043302 | other | upstream | 247721 | 35402697 ~ 35461009 (+) | False | XLOC_021842 |
| TCONS_00043297 | other | upstream | 1523716 | 34053506 ~ 34185014 (+) | True | XLOC_021835 |
| TCONS_00043296 | other | upstream | 1523721 | 34047563 ~ 34185009 (+) | False | XLOC_021835 |
| TCONS_00043293 | other | upstream | 1655021 | 34047416 ~ 34053709 (+) | False | XLOC_021835 |
| TCONS_00043331 | other | downstream | 376693 | 36088091 ~ 36088196 (+) | True | XLOC_021861 |
| TCONS_00043339 | other | downstream | 418603 | 36130001 ~ 36130092 (+) | True | XLOC_021866 |
| TCONS_00043345 | other | downstream | 596263 | 36307661 ~ 36310418 (+) | False | XLOC_021870 |
| TCONS_00043352 | other | downstream | 779716 | 36491114 ~ 36491234 (+) | True | XLOC_021877 |
| TCONS_00043358 | other | downstream | 1078825 | 36790223 ~ 36790332 (+) | True | XLOC_021884 |
