Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00043318 |
| length | 666 |
| RNA type | mRNA |
| GC content | 0.55 |
| exon number | 4 |
| gene id | XLOC_021855 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007134.7 |
| NCBI id | CM002907.2 |
| chromosome length | 46223584 |
| location | 35847200 ~ 35963735 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0030154 | cell differentiation | biological_process |
| GO:0000122 | negative regulation of transcription by RNA polymerase II | biological_process |
| GO:0001889 | liver development | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0048384 | retinoic acid receptor signaling pathway | biological_process |
| GO:0009755 | hormone-mediated signaling pathway | biological_process |
| GO:0060037 | pharyngeal system development | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0004879 | nuclear receptor activity | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| GO:0003707 | steroid hormone receptor activity | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-980526-531 | Enables DNA binding activity. Involved in pharyngeal system development. Acts upstream of or within liver development. Predicted to be located in nucleus. Is expressed in several structures, including central nervous system; germ ring; gonad; mesoderm; and neural crest. Orthologous to human RARG (retinoic acid receptor gamma). |
| ensembl_id | ENSDART00000129222 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00043317 | lncRNA | upstream | 48921 | 35790808 ~ 35798279 (+) | True | XLOC_021854 |
| TCONS_00044872 | lncRNA | upstream | 117138 | 35729255 ~ 35730062 (+) | True | XLOC_021852 |
| TCONS_00044870 | lncRNA | upstream | 119678 | 35723438 ~ 35727522 (+) | False | XLOC_021851 |
| TCONS_00044871 | lncRNA | upstream | 119678 | 35723442 ~ 35727522 (+) | True | XLOC_021851 |
| TCONS_00044869 | lncRNA | upstream | 144479 | 35694272 ~ 35702721 (+) | False | XLOC_021848 |
| TCONS_00043323 | lncRNA | downstream | 17776 | 35969429 ~ 35969745 (+) | False | XLOC_021856 |
| TCONS_00043335 | lncRNA | downstream | 157800 | 36109453 ~ 36145326 (+) | False | XLOC_021860 |
| TCONS_00043342 | lncRNA | downstream | 198777 | 36150430 ~ 36154411 (+) | True | XLOC_021868 |
| TCONS_00044680 | lncRNA | downstream | 365696 | 36317349 ~ 36317913 (+) | True | XLOC_021871 |
| TCONS_00044681 | lncRNA | downstream | 367525 | 36319178 ~ 36319588 (+) | True | XLOC_021872 |
| TCONS_00043316 | mRNA | upstream | 64835 | 35759843 ~ 35782365 (+) | True | XLOC_021853 |
| TCONS_00043314 | mRNA | upstream | 130681 | 35713557 ~ 35716519 (+) | False | XLOC_021850 |
| TCONS_00043315 | mRNA | upstream | 130808 | 35714574 ~ 35716392 (+) | True | XLOC_021850 |
| TCONS_00043313 | mRNA | upstream | 135802 | 35708730 ~ 35711398 (+) | True | XLOC_021849 |
| TCONS_00043311 | mRNA | upstream | 156864 | 35672542 ~ 35690336 (+) | False | XLOC_021847 |
| TCONS_00043322 | mRNA | downstream | 17575 | 35969228 ~ 36086366 (+) | False | XLOC_021856 |
| TCONS_00043321 | mRNA | downstream | 17575 | 35969228 ~ 36086366 (+) | False | XLOC_021856 |
| TCONS_00043324 | mRNA | downstream | 101291 | 36052944 ~ 36055886 (+) | True | XLOC_021857 |
| TCONS_00043325 | mRNA | downstream | 111946 | 36063599 ~ 36065182 (+) | True | XLOC_021858 |
| TCONS_00043326 | mRNA | downstream | 123145 | 36074798 ~ 36078132 (+) | False | XLOC_021859 |
| TCONS_00043305 | other | upstream | 377341 | 35426577 ~ 35469859 (+) | False | XLOC_021842 |
| TCONS_00043302 | other | upstream | 386191 | 35402697 ~ 35461009 (+) | False | XLOC_021842 |
| TCONS_00043297 | other | upstream | 1662186 | 34053506 ~ 34185014 (+) | True | XLOC_021835 |
| TCONS_00043296 | other | upstream | 1662191 | 34047563 ~ 34185009 (+) | False | XLOC_021835 |
| TCONS_00043293 | other | upstream | 1793491 | 34047416 ~ 34053709 (+) | False | XLOC_021835 |
| TCONS_00043331 | other | downstream | 136438 | 36088091 ~ 36088196 (+) | True | XLOC_021861 |
| TCONS_00043339 | other | downstream | 178348 | 36130001 ~ 36130092 (+) | True | XLOC_021866 |
| TCONS_00043345 | other | downstream | 356008 | 36307661 ~ 36310418 (+) | False | XLOC_021870 |
| TCONS_00043352 | other | downstream | 539461 | 36491114 ~ 36491234 (+) | True | XLOC_021877 |
| TCONS_00043358 | other | downstream | 838570 | 36790223 ~ 36790332 (+) | True | XLOC_021884 |
