RNA id: TCONS_00044873


Basic Information

Item Value
RNA id TCONS_00044873
length 934
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id XLOC_021874
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 36364905 ~ 36365917 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACACTCCTATTGAAGAAAAGCACAGAGCTGTGGGACAGAGAAACAAGGTTTTGGAGATATTATCATGTGTAATAAAGGAAAAGAGCAAAGGGGAATCTGGAGTCGGTGGtaaccttcattaatctggggtcaccacagcggaatgaaccaccaacttatccagcacatgctttacgcagccgatgcccttccagctgcaccccatcactggggaacacccacacactctcattcacacgcatacactacgaactatttagctaacccaattcacctatagtctttggactgtgggggaaagcggagcacctggagcaaacctaagccaacacagggagaacatacaaactccacacagtaatacCAGCTAactcagccaaggctcaaaccagtgaccttcttgctgtgaggcgacagcgccaccccaaagataaaataaaatacacaatttttgAAGACAATATTCAGAGGCTATATTCAAGTCAAAGGGCAGATTCACCCACCCACCCCTTCAAGATTGTGGCTGTTTGTTTGAGCAAACAAATCTAAAATACctggaattaaataaaaatatacgcaaaaaataaatactttaccACACGGAAATTTTAAATGTGGGAATTGTTTACAATGCAACTTCACATACAAAACGTCCATTTTTACACATCCCCATACAGCCAAAAAGTTCAAAATTCGAGACACTATTTTGTGCAAGACCGCTAACGTAATCTATATGTTGCGGTGCCCGTGTTGTTTGTTATGCAAGTAAGATGAGTAGGCCTTTAAAAATTCGCATTTCTGAACATTGATGCGCTATTCGACATTATGATCAGAGAAGTCCTGTTGTGCAGCATTTCTTCTGTTATGAGACATTCTGTCTCCACTCTACAATGCAAAGGGATTGAAGTTGTGAAGTGTCCATGTTGAAGGGGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044681 lncRNA upstream 45317 36319178 ~ 36319588 (+) True XLOC_021872
TCONS_00044680 lncRNA upstream 46992 36317349 ~ 36317913 (+) True XLOC_021871
TCONS_00043342 lncRNA upstream 210494 36150430 ~ 36154411 (+) True XLOC_021868
TCONS_00043335 lncRNA upstream 219579 36109453 ~ 36145326 (+) False XLOC_021860
TCONS_00043323 lncRNA upstream 395160 35969429 ~ 35969745 (+) False XLOC_021856
TCONS_00044874 lncRNA downstream 52202 36418119 ~ 36420278 (+) False XLOC_021875
TCONS_00043349 lncRNA downstream 52221 36418138 ~ 36420278 (+) False XLOC_021875
TCONS_00044875 lncRNA downstream 52232 36418149 ~ 36420278 (+) False XLOC_021875
TCONS_00043350 lncRNA downstream 52252 36418169 ~ 36420278 (+) True XLOC_021875
TCONS_00044682 lncRNA downstream 92430 36458347 ~ 36466443 (+) False XLOC_021876
TCONS_00043348 mRNA upstream 10799 36340520 ~ 36354106 (+) True XLOC_021873
TCONS_00043346 mRNA upstream 54490 36308428 ~ 36310415 (+) False XLOC_021870
TCONS_00043344 mRNA upstream 55288 36306539 ~ 36309617 (+) False XLOC_021870
TCONS_00043347 mRNA upstream 55336 36308717 ~ 36309569 (+) True XLOC_021870
TCONS_00043343 mRNA upstream 173917 36178104 ~ 36190988 (+) True XLOC_021869
TCONS_00043351 mRNA downstream 94322 36460239 ~ 36488629 (+) True XLOC_021876
TCONS_00043353 mRNA downstream 236067 36601984 ~ 36605837 (+) True XLOC_021879
TCONS_00043354 mRNA downstream 250800 36616717 ~ 36645135 (+) True XLOC_021880
TCONS_00043355 mRNA downstream 287459 36653376 ~ 36655640 (+) True XLOC_021881
TCONS_00043356 mRNA downstream 364796 36730713 ~ 36750301 (+) True XLOC_021882
TCONS_00043345 other upstream 54487 36307661 ~ 36310418 (+) False XLOC_021870
TCONS_00043339 other upstream 234813 36130001 ~ 36130092 (+) True XLOC_021866
TCONS_00043331 other upstream 276709 36088091 ~ 36088196 (+) True XLOC_021861
TCONS_00043305 other upstream 895046 35426577 ~ 35469859 (+) False XLOC_021842
TCONS_00043302 other upstream 903896 35402697 ~ 35461009 (+) False XLOC_021842
TCONS_00043352 other downstream 125197 36491114 ~ 36491234 (+) True XLOC_021877
TCONS_00043358 other downstream 424306 36790223 ~ 36790332 (+) True XLOC_021884
TCONS_00043361 other downstream 720248 37086165 ~ 37093123 (+) False XLOC_021888
TCONS_00043368 other downstream 1072917 37438834 ~ 37438950 (+) True XLOC_021894
TCONS_00043373 other downstream 1126818 37492735 ~ 37492851 (+) True XLOC_021899

Expression Profile

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