RNA id: TCONS_00043362


Basic Information

Item Value
RNA id TCONS_00043362
length 1289
RNA type mRNA
GC content 0.39
exon number 2
gene id XLOC_021888
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 37086159 ~ 37094205 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAAGCGCGTCTTCAACACTGGCGACTGAAGTGAAAATGCCTCACTTTCCCTCTTCAACAACGACTGAAAAAAGCAGAATAACATAATAAAGTTTTCAATGTCCTCTGGAGAAAGGATGCACGTGACCAGGCCCAAGTCTTCAAAAGGACGCAGCAGACCCATGATAACTAACTCTTCAATGATCTACACACCTTCCCAGCCCTCAGCTCTTTCCCCACAACCTCCAGCCGCCGCCAAGACCAAAGACAAGTCAAACCAAAGCCTCCGATCCCGAGCCATTCTGAGGCGCAGCAGTCAACCAACAACAGACATATTGACTGAAGCCTACGACAGACCCCCGGAAGAGCCCGTCTCTCTCAACAGATACAGAGTTCTGCCATCCATTGAGAAAAAAACCAGTACGGACAACCAGAAGTGCAGTCAATGTGTCAGCAGGCATAGGAAATGTCAACACACAAATGCCAGACTGGATGTGGTTTCAGATTCAACTCCTCCTGAGGAATCAGACCTTCTGCTTGCTATCAGAACTCCATGCGGACAGAGATTTAAGCGCAGTTTTCGGCCATCAGACCAGCTGAAGGGGGTGCTATCGGCTGCCGAGGCTGAATTTGGAGACAGGTTTGATAATTGTATTATTGAGACTATGGATGTGCCGCGCAGGACTTTTTCTAACCTTACGATGACCTTGGCTCAGTGTGGCGTGCTAAACAAATCGGTTTTATGCATTTCCCATGATGACAGCGAAATGGATTTAACTTGAAACGTGGTTGTAGTGTAACCTTTTATGGAGATGCAGCAACACTCAAATTGTTTAGATTTACgcacatacatttaaatacaacGGTTTTAGATTTGCATTTCAAATTATGAGTCACGTTCTTCCTGATTAAACCTGTGTGGATAAATGTTAATTTGTccaatctaatttaaaaaaagtttaggattcatttataaataatattggttGTCCGAAATATAAAAAATTACTTGATGAAAACAAATAAGATGATTAAAATGTAAGAAATGGTTTGTAttatattaacataaaaaaatctgaGGAAAATGTGTTATTAGAGAGATTTAGATGAACATGttatatattatagataaaatatatattttgcttataaaaaataaacctaTTTCCTTGACCACGGAGACTTTTtccagtgaatgaatgaatgaatttacagtgcatccagaaagtattcatggagcttcactttttcctcatttgtttatattacagccttattccaatgtgaattaaattcatttatttcctcaa

Function

GO:

id name namespace
GO:1900226 negative regulation of NLRP3 inflammasome complex assembly biological_process
GO:0120009 intermembrane lipid transfer biological_process
GO:0032691 negative regulation of interleukin-1 beta production biological_process
GO:0035627 ceramide transport biological_process
GO:0010507 negative regulation of autophagy biological_process
GO:0006869 lipid transport biological_process
GO:0005768 endosome cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0005829 cytosol cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0005640 nuclear outer membrane cellular_component
GO:0010008 endosome membrane cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0120013 lipid transfer activity molecular_function
GO:1902387 ceramide 1-phosphate binding molecular_function
GO:1902388 ceramide 1-phosphate transfer activity molecular_function
GO:0008289 lipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060825-319 Acts upstream of or within determination of heart left/right asymmetry. Predicted to be located in cilium. Orthologous to human UBXN10 (UBX domain protein 10).

Ensembl:

ensembl_id ENSDART00000074406

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044877 lncRNA upstream 52480 37026350 ~ 37038409 (+) True XLOC_021887
TCONS_00043359 lncRNA upstream 195520 36891729 ~ 36895369 (+) True XLOC_021886
TCONS_00044876 lncRNA upstream 244909 36842632 ~ 36845980 (+) True XLOC_021885
TCONS_00044684 lncRNA upstream 505138 36585179 ~ 36585751 (+) True XLOC_021878
TCONS_00044683 lncRNA upstream 619054 36460041 ~ 36471835 (+) False XLOC_021876
TCONS_00044685 lncRNA downstream 19082 37113287 ~ 37118114 (+) True XLOC_021889
TCONS_00044878 lncRNA downstream 132976 37227181 ~ 37277704 (+) False XLOC_021891
TCONS_00043364 lncRNA downstream 133001 37227206 ~ 37433229 (+) False XLOC_021891
TCONS_00044879 lncRNA downstream 133013 37227218 ~ 37297945 (+) False XLOC_021891
TCONS_00044880 lncRNA downstream 133013 37227218 ~ 37433229 (+) False XLOC_021891
TCONS_00043360 mRNA upstream 708 37086159 ~ 37090181 (+) False XLOC_021888
TCONS_00043357 mRNA upstream 292269 36771593 ~ 36798620 (+) True XLOC_021883
TCONS_00043356 mRNA upstream 340588 36730713 ~ 36750301 (+) True XLOC_021882
TCONS_00043355 mRNA upstream 435249 36653376 ~ 36655640 (+) True XLOC_021881
TCONS_00043354 mRNA upstream 445754 36616717 ~ 36645135 (+) True XLOC_021880
TCONS_00043363 mRNA downstream 91042 37185247 ~ 37198890 (+) True XLOC_021890
TCONS_00043365 mRNA downstream 229757 37323962 ~ 37325961 (+) True XLOC_021893
TCONS_00043369 mRNA downstream 350728 37444933 ~ 37453984 (+) True XLOC_021895
TCONS_00043370 mRNA downstream 364397 37458602 ~ 37466323 (+) False XLOC_021896
TCONS_00043371 mRNA downstream 372762 37466967 ~ 37480785 (+) True XLOC_021897
TCONS_00043358 other upstream 300557 36790223 ~ 36790332 (+) True XLOC_021884
TCONS_00043352 other upstream 599655 36491114 ~ 36491234 (+) True XLOC_021877
TCONS_00043345 other upstream 780471 36307661 ~ 36310418 (+) False XLOC_021870
TCONS_00043339 other upstream 960797 36130001 ~ 36130092 (+) True XLOC_021866
TCONS_00043331 other upstream 1002693 36088091 ~ 36088196 (+) True XLOC_021861
TCONS_00043368 other downstream 344629 37438834 ~ 37438950 (+) True XLOC_021894
TCONS_00043373 other downstream 398530 37492735 ~ 37492851 (+) True XLOC_021899
TCONS_00043375 other downstream 644658 37738863 ~ 37798412 (+) False XLOC_021904
TCONS_00043376 other downstream 656129 37750334 ~ 37768156 (+) True XLOC_021904
TCONS_00043378 other downstream 757625 37851830 ~ 37854622 (+) True XLOC_021906

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_01757774_01758445.mRNA True 2255 mRNA 0.36 1 CI01000001 1757189 ~ 1759443 (-)