RNA id: TCONS_00044879


Basic Information

Item Value
RNA id TCONS_00044879
length 1066
lncRNA type antisense_over
GC content 0.41
exon number 6
gene id XLOC_021891
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 37227181 ~ 37433229 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGTCCGTCTCCCTCAGTTTTCTCAGGTTGTGTTTGTTTAGTGAAAAGTGctgattttcaattatttccgTTTTCATTTAGCTTTAACAAGTACTGCAGTTTAGATCTGCTTTCTCCATGTGTTTTAAATTGACTAGCTACCAAAATTTTTATAGTATTTCTAGTGTGTTCCACTGAAGAAAGAAATGCACACAGATCTAGACAAACATGCTTATTATACTGAAGAAAGAAATCTATACAGATTTGGAAAGACATGcaTATTCCACTGAAGAAAGAAATGTATACAAATTTGGAAAGACATGATCATCATGTTCAAGGAAACAGTTTGGAGCAGCTTTAGAGAAAAGCAACCTTGATGTTCACAGaaaccatgaACTACTTAAATGCACACAAACTTGTCAACAAagagtcactgtcatttctggaggagattcgccatcctcaccaagttgtggattacttctaAAGAACAGTGCGATCTGACGAAGCATTATTCGGAGGATGATTGTGTAACACAGCCATAAataagGTCATTCAGAGAAAGTTTCCGAAACAGGAGTAACATCTTCAGTTTATAAAGATTTGTTGTTCACCAAGTGATGTGCAGTTCAGTGATGGCTGACTAATGCGAACATCAAGCAGAAGCAGAAACATGTGAGAAAATGCCCTTTCCACATCAACAGCTGACTCACCAGAGGACGGCATGAGCCTCGGGCCTCGGCTTTAACATTACTCACCTTGTTGAGGGAACGAGTAAACTGTTTGTGTTGTGTACAGCCTGCTGTTCCTTACCCCCCGAAGACACTCAGACAAGAAAACACTGTGCCCACTCAAGCACGTACTGGAAAAAGTGTAGACAGATGGACGGGCGGGCAACAAACAGGAGGATATAGCTGGATACCAGATGTGTCTGCATTAGTGCCGTAGAGCGCGTCTATGAAGGTGTATGGGGATACAGATGTACTATACGCATACGCATACACACTTGTGCTTTTAAACCAAAATTACAGAAAGTTTCCAGATGGATTGTGTTTACATGAAGCAATTAAGCAGGACGTGTAGGTGG

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0009888 tissue development biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0061009 common bile duct development biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005488 binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044685 lncRNA upstream 109104 37113287 ~ 37118114 (+) True XLOC_021889
TCONS_00044877 lncRNA upstream 188809 37026350 ~ 37038409 (+) True XLOC_021887
TCONS_00043359 lncRNA upstream 331849 36891729 ~ 36895369 (+) True XLOC_021886
TCONS_00044876 lncRNA upstream 381238 36842632 ~ 36845980 (+) True XLOC_021885
TCONS_00044684 lncRNA upstream 641467 36585179 ~ 36585751 (+) True XLOC_021878
TCONS_00044887 lncRNA downstream 63313 37361258 ~ 37433229 (+) False XLOC_021891
TCONS_00043366 lncRNA downstream 95672 37393617 ~ 37398273 (+) False XLOC_021891
TCONS_00043367 lncRNA downstream 95672 37393617 ~ 37408084 (+) False XLOC_021891
TCONS_00044686 lncRNA downstream 96833 37394778 ~ 37433084 (+) False XLOC_021891
TCONS_00044888 lncRNA downstream 96852 37394797 ~ 37433229 (+) True XLOC_021891
TCONS_00043363 mRNA upstream 28328 37185247 ~ 37198890 (+) True XLOC_021890
TCONS_00043362 mRNA upstream 133013 37090889 ~ 37094205 (+) True XLOC_021888
TCONS_00043360 mRNA upstream 137037 37086159 ~ 37090181 (+) False XLOC_021888
TCONS_00043357 mRNA upstream 428598 36771593 ~ 36798620 (+) True XLOC_021883
TCONS_00043356 mRNA upstream 476917 36730713 ~ 36750301 (+) True XLOC_021882
TCONS_00043365 mRNA downstream 26017 37323962 ~ 37325961 (+) True XLOC_021893
TCONS_00043369 mRNA downstream 146988 37444933 ~ 37453984 (+) True XLOC_021895
TCONS_00043370 mRNA downstream 160657 37458602 ~ 37466323 (+) False XLOC_021896
TCONS_00043371 mRNA downstream 169022 37466967 ~ 37480785 (+) True XLOC_021897
TCONS_00043372 mRNA downstream 184782 37482727 ~ 37490249 (+) True XLOC_021898
TCONS_00043361 other upstream 134095 37086165 ~ 37093123 (+) False XLOC_021888
TCONS_00043358 other upstream 436886 36790223 ~ 36790332 (+) True XLOC_021884
TCONS_00043352 other upstream 735984 36491114 ~ 36491234 (+) True XLOC_021877
TCONS_00043345 other upstream 916800 36307661 ~ 36310418 (+) False XLOC_021870
TCONS_00043339 other upstream 1097126 36130001 ~ 36130092 (+) True XLOC_021866
TCONS_00043368 other downstream 140889 37438834 ~ 37438950 (+) True XLOC_021894
TCONS_00043373 other downstream 194790 37492735 ~ 37492851 (+) True XLOC_021899
TCONS_00043375 other downstream 440918 37738863 ~ 37798412 (+) False XLOC_021904
TCONS_00043376 other downstream 452389 37750334 ~ 37768156 (+) True XLOC_021904
TCONS_00043378 other downstream 553885 37851830 ~ 37854622 (+) True XLOC_021906

Expression Profile

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