RNA id: TCONS_00043369


Basic Information

Item Value
RNA id TCONS_00043369
length 681
RNA type mRNA
GC content 0.51
exon number 4
gene id XLOC_021895
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 37444933 ~ 37453984 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGGGTCAGGAGGTCGTGCCTTACTCCATCAAGTACCAGGTGTCTCTTCAGGTGGACAGAAAGCATTTTTGTGGAGGAACACTGATTCAGCCGCAGTGGGTGTTGACTGCTGCCCACTGCTGGAGACCGGCCAGTGTGATTCAGGTGGTGCTGAGTGAGCACAATCTCGCTGTAGAAGAGGGATTTGAGCAAGTTTGTACTGTGGCCAAAGTGTTCAGTCATGTTGCCTACAATCCGAAAACTTTTAACAATGACATCATGATTATTAAGCTCACTGCTCCAGCACAGATAAATGCGTATGTTCAGCCAGCGCTGTTGCCCACCGCAGACACACCAGAGTTGGCTGGAGGAAGCAGCTGCACTGTGAGCGGATGGGGAGTGACGCGGCTTTACAACTTCTATCTGTCACCTATTCTGCGCGCGGTGGATGTGGAAATCTTCAGCAGCTGCCAGTTATACTACTACTACAGAGTCAACGACAACATGATTTGTGCTGGCTCACGTTTCGGTGGAAAAGATTCATGCCAGGGAGATTCAGGTGGCCCACTCATTTGTGATGGCTATCTAGAAGGCATTGTGTCGTGGGGAATCGGCTGTGCTCTTCCGTACTATCCTGGCGTCTACACAAAAGTGAGAAACTACAACCGCTGGATCGACTGGATCATCAGCACTGAAAGCTGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000074385

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00043364 lncRNA upstream 11704 37227206 ~ 37433229 (+) False XLOC_021891
TCONS_00044880 lncRNA upstream 11704 37227218 ~ 37433229 (+) False XLOC_021891
TCONS_00044881 lncRNA upstream 11704 37227224 ~ 37433229 (+) False XLOC_021891
TCONS_00044882 lncRNA upstream 11704 37227593 ~ 37433229 (+) False XLOC_021891
TCONS_00044886 lncRNA upstream 11704 37293522 ~ 37433229 (+) False XLOC_021891
TCONS_00044687 lncRNA downstream 10387 37464371 ~ 37464746 (+) True XLOC_021896
TCONS_00044889 lncRNA downstream 70906 37524890 ~ 37546006 (+) True XLOC_021900
TCONS_00044890 lncRNA downstream 125127 37579111 ~ 37582640 (+) False XLOC_021901
TCONS_00044688 lncRNA downstream 125131 37579115 ~ 37610542 (+) True XLOC_021901
TCONS_00044891 lncRNA downstream 206694 37660678 ~ 37661442 (+) True XLOC_021902
TCONS_00043365 mRNA upstream 118972 37323962 ~ 37325961 (+) True XLOC_021893
TCONS_00043363 mRNA upstream 246043 37185247 ~ 37198890 (+) True XLOC_021890
TCONS_00043362 mRNA upstream 350728 37090889 ~ 37094205 (+) True XLOC_021888
TCONS_00043360 mRNA upstream 354752 37086159 ~ 37090181 (+) False XLOC_021888
TCONS_00043357 mRNA upstream 646313 36771593 ~ 36798620 (+) True XLOC_021883
TCONS_00043370 mRNA downstream 4618 37458602 ~ 37466323 (+) False XLOC_021896
TCONS_00043371 mRNA downstream 12983 37466967 ~ 37480785 (+) True XLOC_021897
TCONS_00043372 mRNA downstream 28743 37482727 ~ 37490249 (+) True XLOC_021898
TCONS_00043374 mRNA downstream 125123 37579107 ~ 37720166 (+) False XLOC_021901
TCONS_00043377 mRNA downstream 361661 37815645 ~ 37816969 (+) True XLOC_021905
TCONS_00043368 other upstream 5983 37438834 ~ 37438950 (+) True XLOC_021894
TCONS_00043361 other upstream 351810 37086165 ~ 37093123 (+) False XLOC_021888
TCONS_00043358 other upstream 654601 36790223 ~ 36790332 (+) True XLOC_021884
TCONS_00043352 other upstream 953699 36491114 ~ 36491234 (+) True XLOC_021877
TCONS_00043345 other upstream 1134515 36307661 ~ 36310418 (+) False XLOC_021870
TCONS_00043373 other downstream 38751 37492735 ~ 37492851 (+) True XLOC_021899
TCONS_00043375 other downstream 284879 37738863 ~ 37798412 (+) False XLOC_021904
TCONS_00043376 other downstream 296350 37750334 ~ 37768156 (+) True XLOC_021904
TCONS_00043378 other downstream 397846 37851830 ~ 37854622 (+) True XLOC_021906
TCONS_00043382 other downstream 638021 38092005 ~ 38094560 (+) False XLOC_021909

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_01582644_01584095.mRNA True 936 mRNA 0.44 4 CI01000001 1582644 ~ 1584440 (-)