RNA id: TCONS_00044428


Basic Information

Item Value
RNA id TCONS_00044428
length 837
RNA type mRNA
GC content 0.49
exon number 3
gene id XLOC_022528
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 35786942 ~ 35790260 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGTCATGACGCCTGAGTAACCCGGAAACACACGCGGATGTTGTAGAACATATATTGCAGGCATTTAGATGAAAAAAGCGTCTGAATTCATGGCGTAGAAAAGAAGTCAAGCTGACAGTTGCTCATGATGAGTCCAGAAATGAACCATTAATTTCAATGCCCCAAAAGCTGTAGGAGGATGTTGATCTAGGATTTCTTCTGATTCCTCCACTCACCTTCAGACAGATTTGTGCCCATCATGTTTGTGACGGCATACCTAGCATTTATAGTCCTAGCAGGACTGTGTGTGGCTTTAGAGATCACAGCCCGGCGTCTCACCTTATCCCAGGCCACACAGACAGCAGTCGCCAATCCGGCTTTCCAGCGTTTCCAGAAGCTCTTTCTGAAGGCGTATCTCCTGGCTCTCTGGGCAGACTGGCTACAAGGGCCTTACCTTTACAAACTATACCGACATTACAACTTCTTGGAGTCACAGATTGCCATCCTATACGTCTGCGGTCTGGCTTCTTGTGTGCTGTTTGCCCCGGTGGCCGGATGGCTGCCACAGTTTCTCGGCCGAAGACAGACGTGCCTCCTCTTCTGCTTGGCTTATTCAGTGTGTTGCATCACCAAACTCTCACAAGACTATTTTATGCTCATTCTAGGACGTGTATTAGGCGGCCTGTCCACTTCTCTGCTAACAACCACCTTTGAGGCCTGGTATGTGCACGGTCACGTTGACATCCATGACTTCCCCAAAGAATGGATCCCTGTTACGTTTGGTAAAGTCGCCAATTGGAATTATGGACTTGCAGTTGGTGCTGGACTAGTGGCGAATTTGTTCGCAGAATGGCTTGG

Function

GO:

id name namespace
GO:0015689 molybdate ion transport biological_process
GO:0006811 ion transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015098 molybdate ion transmembrane transporter activity molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-040718-468 Predicted to enable molybdate ion transmembrane transporter activity. Predicted to act upstream of or within molybdate ion transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human MFSD5 (major facilitator superfamily domain containing 5).

Ensembl:

ensembl_id ENSDART00000141141

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045066 lncRNA downstream 119819 35663852 ~ 35669221 (-) True XLOC_022525
TCONS_00045065 lncRNA downstream 123458 35663852 ~ 35665582 (-) False XLOC_022525
TCONS_00045064 lncRNA downstream 239378 35540360 ~ 35549662 (-) False XLOC_022523
TCONS_00044416 lncRNA downstream 392280 35393107 ~ 35396760 (-) True XLOC_022520
TCONS_00045063 lncRNA downstream 585956 35200692 ~ 35203084 (-) True XLOC_022518
TCONS_00044436 lncRNA upstream 230540 36020796 ~ 36051826 (-) True XLOC_022532
TCONS_00044437 lncRNA upstream 291169 36081425 ~ 36088234 (-) True XLOC_022533
TCONS_00044438 lncRNA upstream 302090 36092346 ~ 36095368 (-) True XLOC_022534
TCONS_00044440 lncRNA upstream 319958 36110214 ~ 36228277 (-) False XLOC_022535
TCONS_00044439 lncRNA upstream 319958 36110214 ~ 36249991 (-) False XLOC_022535
TCONS_00044426 mRNA downstream 32925 35721607 ~ 35756115 (-) True XLOC_022527
TCONS_00044425 mRNA downstream 94579 35690861 ~ 35694461 (-) True XLOC_022526
TCONS_00044424 mRNA downstream 94869 35690657 ~ 35694171 (-) False XLOC_022526
TCONS_00044423 mRNA downstream 140040 35642061 ~ 35649000 (-) True XLOC_022524
TCONS_00044422 mRNA downstream 243486 35545078 ~ 35545554 (-) True XLOC_022523
TCONS_00044430 mRNA upstream 5503 35795759 ~ 35810001 (-) False XLOC_022529
TCONS_00044431 mRNA upstream 5503 35795759 ~ 35821521 (-) True XLOC_022529
TCONS_00044433 mRNA upstream 191583 35981839 ~ 36003282 (-) False XLOC_022531
TCONS_00044434 mRNA upstream 192792 35983048 ~ 36003441 (-) False XLOC_022531
TCONS_00044447 mRNA upstream 506965 36297221 ~ 36306356 (-) False XLOC_022536
TCONS_00044409 other downstream 532595 35244378 ~ 35256445 (-) False XLOC_022519
TCONS_00044402 other downstream 1802675 33978425 ~ 33986365 (-) True XLOC_022514
TCONS_00044400 other downstream 1820052 33968866 ~ 33968988 (-) True XLOC_022513
TCONS_00044391 other downstream 2044269 33739477 ~ 33744771 (-) False XLOC_022510
TCONS_00044369 other downstream 2487621 33301304 ~ 33301419 (-) True XLOC_022500
TCONS_00044432 other upstream 74470 35864726 ~ 35864853 (-) True XLOC_022530
TCONS_00044435 other upstream 208291 35998547 ~ 35999332 (-) True XLOC_022531
TCONS_00044457 other upstream 531754 36322010 ~ 36322124 (-) True XLOC_022538
TCONS_00044460 other upstream 623442 36413698 ~ 36418022 (-) False XLOC_022539
TCONS_00044467 other upstream 719741 36509997 ~ 36510119 (-) True XLOC_022543

Expression Profile

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