RNA id: TCONS_00044435


Basic Information

Item Value
RNA id TCONS_00044435
length 620
RNA type processed_transcript
GC content 0.46
exon number 2
gene id XLOC_022531
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 35981839 ~ 36003441 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTGGATGGAAAGGGAGAGATTTGTTCTTGCAGCGCTGCCTTTACCTTCTCAGCACCAAAGCCCCTGGAAGAGCTGGTGACCCTGGAGGAGGAGGGTCAAGGAGAGGAAGTGGGCGAGGACATGTTGCTGGTCATCCCTAGAGCTCAGCTACTGCAGCAAAACATAATCAAAGCATTTTGACGAGTCAAGATCTGAGTAAATTGGATGGTATGCAAACAATCTGGATATTCAGCGTGGTTGATTCAAGAGAAATGGGCTCAATTAAACTGACTAGCCAAAATTGTTATGGAAAGGCAACTGGCTTAGAGTCTCTGCAGTTGCTTGTGGGTTGCAGCATTGGTGAAAATTTACAACAGTGGCCTGAGGGGGAACAATCCACAAACCGGCAACAGGGGTTTGGGCTTTCTGTGCATGAAGGCATTGACGGGTGAGCCATCTGTTCTAAACCGACAGAAGATCTACTGTGGCACAAAGCACACAAATTGGTCATAGAATGTTAATGATGCTTATGAGTGAATTGTGTCTGAACAGTATCTAAAGCGGTGTAGCCACAGACCAAAGGGTATGTGTTGACCCGTCTACCACCAACACTAGATTATCTGAAGAAAATGATGAAGAG

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6911 Predicted to be located in cytoplasm and nucleus. Orthologous to human CALCOCO1 (calcium binding and coiled-coil domain 1).

Ensembl:

ensembl_id ENSDART00000129574

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045066 lncRNA downstream 329326 35663852 ~ 35669221 (-) True XLOC_022525
TCONS_00045065 lncRNA downstream 332965 35663852 ~ 35665582 (-) False XLOC_022525
TCONS_00045064 lncRNA downstream 448885 35540360 ~ 35549662 (-) False XLOC_022523
TCONS_00044416 lncRNA downstream 601787 35393107 ~ 35396760 (-) True XLOC_022520
TCONS_00045063 lncRNA downstream 795463 35200692 ~ 35203084 (-) True XLOC_022518
TCONS_00044436 lncRNA upstream 21464 36020796 ~ 36051826 (-) True XLOC_022532
TCONS_00044437 lncRNA upstream 82093 36081425 ~ 36088234 (-) True XLOC_022533
TCONS_00044438 lncRNA upstream 93014 36092346 ~ 36095368 (-) True XLOC_022534
TCONS_00044440 lncRNA upstream 110882 36110214 ~ 36228277 (-) False XLOC_022535
TCONS_00044439 lncRNA upstream 110882 36110214 ~ 36249991 (-) False XLOC_022535
TCONS_00044431 mRNA downstream 177026 35795759 ~ 35821521 (-) True XLOC_022529
TCONS_00044430 mRNA downstream 188546 35795759 ~ 35810001 (-) False XLOC_022529
TCONS_00044427 mRNA downstream 208287 35786942 ~ 35790260 (-) False XLOC_022528
TCONS_00044447 mRNA upstream 297889 36297221 ~ 36306356 (-) False XLOC_022536
TCONS_00044448 mRNA upstream 298827 36298159 ~ 36306006 (-) False XLOC_022536
TCONS_00044449 mRNA upstream 299686 36299018 ~ 36306337 (-) False XLOC_022536
TCONS_00044450 mRNA upstream 299855 36299187 ~ 36303216 (-) False XLOC_022536
TCONS_00044451 mRNA upstream 299874 36299206 ~ 36306006 (-) False XLOC_022536
TCONS_00044432 other downstream 133694 35864726 ~ 35864853 (-) True XLOC_022530
TCONS_00044409 other downstream 742102 35244378 ~ 35256445 (-) False XLOC_022519
TCONS_00044402 other downstream 2012182 33978425 ~ 33986365 (-) True XLOC_022514
TCONS_00044400 other downstream 2029559 33968866 ~ 33968988 (-) True XLOC_022513
TCONS_00044391 other downstream 2253776 33739477 ~ 33744771 (-) False XLOC_022510
TCONS_00044457 other upstream 322678 36322010 ~ 36322124 (-) True XLOC_022538
TCONS_00044460 other upstream 414366 36413698 ~ 36418022 (-) False XLOC_022539
TCONS_00044467 other upstream 510665 36509997 ~ 36510119 (-) True XLOC_022543
TCONS_00044471 other upstream 719043 36718375 ~ 36718495 (-) True XLOC_022548
TCONS_00044475 other upstream 829140 36828472 ~ 36828588 (-) True XLOC_022550

Expression Profile

//