RNA id: TCONS_00044436


Basic Information

Item Value
RNA id TCONS_00044436
length 5455
lncRNA type intronic
GC content 0.39
exon number 2
gene id XLOC_022532
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 36020796 ~ 36051826 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCAATGGTTACGTAGTTTCAAAAAATGCTTTCCAAAAAGTATGTTAGTAATACACTctgttttgtatgttgttgttttttgttgtatttgaAGACCATGGTATATAATACAACCGAATATTTAATTAGACTTGTCACAACAGGAAAGAATGCATCGCCACTGGATCAGTAGATTTTCTTCCGGTCTGATGTTGCACATTTACAATGCAACGTTTCAtggggaatgaatgaataagagagTCTCATACCCTGTTAAAACATTTCCTCTGTTGTTAGATTCAAAAGTATAGCGACGAGACAAAGATAGACGCTCCTTTCACATGACAgataatctgacttttttttttacattttggacAGTATTGTGTGTTTTTTACGCTAGATATAATGTTAAAAAGTGGATTACTCATtttttccaaagaaaaaaaaatcatcggTGTCTTCACAGACCGAAGAGAGGACAGATCTTACAAACGGCAGCTGCATGGAAGTCCAAGGTCAAGGTAATGACATCTGGGTGTTTACTGTGCTGACTGGCTGAGACTTGCTGCAGGCTGAATGAGTACCTGAGGGGTGGCTGGATGGCGCGGCAGGGCGGTTTACGAGGAGGGATGGTAAACAGACAGCAGCGAGGGCCAAAACCAAGGTCTTGCCCTTTGGATCGAGCAAGTCTAAAGCCGGAGGAAAAAGCCAGCCAAGCAGGAAGCAAATGCAAGCTCCTCATAAATGCTCACTTTTTCAGTCCAGTCAAAATCTGAGCTGTTCCTCAAGAACTTGGACCTTATATAATGTGCCTACTGATATAAATTTTACATTCCACATAATAATCCATTTTTTCATCTGTGTTCTTTTTGGTATGTGGATTTCCACTGCAACTTTTCAGTGAAAGCACTATTTCTGAGgttttcattaatattatcagCTCAGCATTCTGCCGTTTTCCCCCTACATAAGATTAGTTCTAAAATATGAGGGCAATCAAAATCCCACATGACTCAAAACTGGATCAGATCCAGTTTCACTTCAAACTTCCTCTCTCATCCTTGTGATGTTAATCATTGTCCCACAGTTACCAGTGTTCTTTTATCACAAAACACTTTTATAGGAAGACATAATGTTTGGCTGTAAACATGTCTCAAACAACATGCTGCTACATTTGTATGCCAACAGAGCCTGAACCCCACATGAAATCAATTACATCATCCACCGTTCTTAAGTTTTGGTGTCTTCCGACAAAAAGAACGATCGACAGAGAGAAAAAGACAGATAAAGAGAGGTAGAAAGACAGGTTTGCGACATGAGCTGAGATCTTCTTGTTGTGGTATATTCTCCTTGGCACTAAAAGTCATAAAAGGCCTTCAGGTTTTACAATGTCATGTCCAAACGCAGCATCCCCCACGGCTTCTCTTTccccttctctctctttctctcctcccTCTCATCCTCCCTCCCTCTGAGCTACCTTCACCTCCCCCCTTGCTATCTTCCTTCATCAGTCAAAAAAGACATGCTTATTTTTACCGCTGAAAAGCACTATGTACACTGGTAAAAAGTACAGACTGGAAGGAATTTAGTGgtcttgtgtttgtgtataattgAGTTTGTCTGACTGTGGTCAGAATGTTCTAATGCATGTGGCACAGAGCAAACAATCTCAAAACCACTTTGCTACTGATGCCTTTCCAATAACACATCAGAAGTGCCATTTTAGTGAagatttttgccattttttaaaCGTATCGTATCACAAATACAAAATCTTTCATGTTTAGAATTGACTTCAAATGTGTCAAACATTGTGAAAGTCATTCCATTCTTTAAAGCTGACATTCTGATTTATTGTCGGCCTTTCAAAACAAAAGACACAGAGGTGACCAATAAATCCATCCGTACTTTGCTTCCTCAAGCTATTTGTCCTCTTGAGGTGTAAAACACTCTGTGGCAAGCCCTACTTGAACCAGAGCTGTGAACATATAGCGTCCAACAATTATCCTGTCTGTCTGCTCCTCTGCTAATTATGGCTTGCCTGCTGTGTTTGTGCGtgagtgtgcgtgcatgtgtgcgtgtttcTTATGGACAGACTGGGGCTAATAACACCATCTTTTTTGAAAAGACAGAAGGCCTCTGGCCATCGCTTTCAACACACATGCCACACAGGCAGTCCCACCCACAGCACTCAGACCTGTCATTGATGGCCATCCCCTTTCCCACTCTTAGACTCTCGGCAGCTGTGGCCTAGCGTGACAGAAAAGTGCAACAAATTACTTTGCTACCGCTTCTGGGGGCAAATGTCAAATATCCCTCCATATTTACCAGAATGGAGTCGTGCACAGGCTCTTACACGAAGATGGGTATGCTCTGTGCAGGGTGTGGATGTCATGTCagcgaagagagagagagagagagagagaaagagagagaaagagagggaaagagagagagagagaggagagagagagagaaatactgGTTTCCTTTTCTGGATGCCATCCAGGTCTGTGCACAGTACCAGGCAGCTGTCAGTAGGATTGATGAGCCCAGCTGGTAAAGATGTGCTGGGTGTCAGCAGGGCAGCAGATTTTAGCGGGGCCAGAGAGCACTCACCGCATGAGTTAGGTGTGATCTGAAGAGGACGTGATTTAGAGCTCTATGACTGGGCAGGTGAGATGACTGTGCAGCGGATACTTTGCTGGTGAATCAGCCTAAAGTCGTTTTGAGGGGGGAGTGTGCAACAGTGAGCAGAGGTCAGGTTGTGCGTTTGTACCTAAATGTGAGGCAAGCAAGACGTTGCTGGAGGTGCAAAAGCTCAGTGCAGATGTCCAAATAAATGGTAAATCATCGCGGGTGCTAAAATGCTTTTTGCACTGAATGTGTCTGCAAGCCTAAGGGGCGAGCGAATGACTAAAACATTAGCAGGAATCCTCAAGGCCCTTGCACATTTTCCCATCCCCCTTCATGCTAGGtctgtgcaaacacacacacgcacactgagCCGAAATGGTGCCCATTCACATGCACACTTCAAGACATCATGGCCTCTCTCCGGCTGGGGAATGTGTATCTGTGCGGCGTTTTACTCGTATACACAAAGTGTCTATTTAGGTGTGTGTCCTCATTCCAAGAGCTGTAAAGATGCCATTGGCATCTAAGCACAGAACACTGAATCGAGTTACAGGTGTTcctttttacacacaaaaaagacattttatgACCAAGCTTGCATGGAGGCCTGGGGAACCAGAAGTGACACATACCCACAAAACAAGTTAAAACCACGTACCGAGGATCACAGACACCAAATgcgcgcgcacaaacacacatggaGAGAGAAAACTTTAGAGTAAAGAAATAAATCTCTCATATAATTCACAAGATATCATTCCCTTAAAATGCTGGTCAGAAATTTTAACATGTAGAAACGATGTGTGTAAATCATCTTATTTAATGAGGTAAACATTATCCACTTCTTCATAGTGCACAACTAGTCTTTGACTAGCTAAAGTGAGCTGTTCGCTCTACTTATCCCTCTTTTTACAGCAtgcttgaaaataaaaataaagccacAATGAATCGCTCTATGTTTTAACACagacatttgcattttaaaagccATCGTGAGGAGTTAACTTAACAGTTCCTATGTACAGTTACATTATTGCCTCTAATAATTATCAGTGATAAACTGCCTGAAcattaaaaagaaatacaaatcCATTCGCATTTTTATGGCTGGAAAAATTATAGCGTGACATTTGAGAGTCATTGAGCTGCAGCTTACAGGCTTATTTTGGAAAGTCAAAGACATCTCAAACGCTTTGGCAGTTTGTAATTTGGCCGCGGTTTGGGATGGTTACAGTAAGATGGGCTCAACAaagtactttttatttaacacaaactcTTAAATGATAAATGTTAGGAGTAATACCTTGTTAAAGGTCTATAAGTTCACATGAACCATGGCTATATGTATTTATAGCCTCTTAGAGTTGAGAGACAAAGGAGTATAATTTGCAACATGGCCCATTTCATTCACAAAGTCCAGCTAGGAATTCAAAACTTTAAGACTCataaacagaagaaataaatattttatcatcattattactgCTACCAATACAATTTTTATAACCATTACCACCACGTTTACAACTATTACTACTGCTTTTATCACagcaacagcagcaacaacaactattactaccactactataattaataaaaacaaaaactatttaacagATGTAACATATAGTTTTCAAAATACATTCCATTAGATACACACACCAGAAGAGCTGCACAGGAACTGCATTCTGGGCACTTTAGGTGTTGCTGTGTTTTGTGAGTGATTCACCGCCCTCTGGCGGCAGAATAAAGCTCTACAGCAAGTTGCCCTCCCCCCAAAACAGTTCTTTCTGAATGCAGCATACACTTCTGTATGTCCTGTCAAAAACATCTGAAGTGACTCATCAGCTTGCTAGAACAGAATCAGAGAACGAATGAAATAGGGTGTGTCAAAGAAAGAAGACATTCAAAATGCATACGTATTTCTCTACTGCAGCAACATTGGCCTGCACGAGTCAAGACACTTGGCCTTATTTTACCCAACAGTTATAATTTAATCCCTTCAGTTTGCGCACAAAAATGTTCAGCGTTTCATGTTTCAGAATTTCATGTTGGTGCACGTGAGTAATGTTCTTGTCTAATTTTGTTTTTCACAGTTAAACGGTTTATGGTCACCTTTCAGTCAATTATCGTATTACAATTTGTTGATTTTATCATGTGCtaaaaaaatctaacatattaattagtgctgggcaaaggtTAATTGCAATGAatgacattcaaaataaaagtttatgatATAAGATgtgtatcatatatatatttattatgtatatgcaatatatacacatacatacagttgaagtcaaaactattagccccctgaattattagatcgcttgtttatttttttcccaatttcggtttaacggagagcagatttttttcaacacatatctgatcataattttaataattaatttctcataacagatttattttatctttaccatgataaataataagtaaataatatttgactagttatttttcaaaacacttctatacagctcaaagtgacatttaaaggtttaactaggctaattaggtagGCAGGTaacggtaattaggcaagttattgtctaacaatggtttgttctgtagattatagagaaaatatagcttaaaggggctaattattttgtccctaaaatggtgtttaaaatttaaaaattgcttttaatctagccgaaataatacaaataagactttttttccagaagaaaaaatattatcagacatactgtgaaaatgaccttgctctgttgaacatcatttggaaaatatataaaaaagaaaataaaatttgaagggcgctaataattctgacttt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045066 lncRNA downstream 351575 35663852 ~ 35669221 (-) True XLOC_022525
TCONS_00045065 lncRNA downstream 355214 35663852 ~ 35665582 (-) False XLOC_022525
TCONS_00045064 lncRNA downstream 471134 35540360 ~ 35549662 (-) False XLOC_022523
TCONS_00044416 lncRNA downstream 624036 35393107 ~ 35396760 (-) True XLOC_022520
TCONS_00045063 lncRNA downstream 817712 35200692 ~ 35203084 (-) True XLOC_022518
TCONS_00044437 lncRNA upstream 29599 36081425 ~ 36088234 (-) True XLOC_022533
TCONS_00044438 lncRNA upstream 40520 36092346 ~ 36095368 (-) True XLOC_022534
TCONS_00044440 lncRNA upstream 58388 36110214 ~ 36228277 (-) False XLOC_022535
TCONS_00044439 lncRNA upstream 58388 36110214 ~ 36249991 (-) False XLOC_022535
TCONS_00045068 lncRNA upstream 58388 36110214 ~ 36277074 (-) False XLOC_022535
TCONS_00044434 mRNA downstream 17355 35983048 ~ 36003441 (-) False XLOC_022531
TCONS_00044433 mRNA downstream 17514 35981839 ~ 36003282 (-) False XLOC_022531
TCONS_00044431 mRNA downstream 199275 35795759 ~ 35821521 (-) True XLOC_022529
TCONS_00044430 mRNA downstream 210795 35795759 ~ 35810001 (-) False XLOC_022529
TCONS_00044427 mRNA downstream 230536 35786942 ~ 35790260 (-) False XLOC_022528
TCONS_00044447 mRNA upstream 245395 36297221 ~ 36306356 (-) False XLOC_022536
TCONS_00044448 mRNA upstream 246333 36298159 ~ 36306006 (-) False XLOC_022536
TCONS_00044449 mRNA upstream 247192 36299018 ~ 36306337 (-) False XLOC_022536
TCONS_00044450 mRNA upstream 247361 36299187 ~ 36303216 (-) False XLOC_022536
TCONS_00044451 mRNA upstream 247380 36299206 ~ 36306006 (-) False XLOC_022536
TCONS_00044435 other downstream 21464 35998547 ~ 35999332 (-) True XLOC_022531
TCONS_00044432 other downstream 155943 35864726 ~ 35864853 (-) True XLOC_022530
TCONS_00044409 other downstream 764351 35244378 ~ 35256445 (-) False XLOC_022519
TCONS_00044402 other downstream 2034431 33978425 ~ 33986365 (-) True XLOC_022514
TCONS_00044400 other downstream 2051808 33968866 ~ 33968988 (-) True XLOC_022513
TCONS_00044457 other upstream 270184 36322010 ~ 36322124 (-) True XLOC_022538
TCONS_00044460 other upstream 361872 36413698 ~ 36418022 (-) False XLOC_022539
TCONS_00044467 other upstream 458171 36509997 ~ 36510119 (-) True XLOC_022543
TCONS_00044471 other upstream 666549 36718375 ~ 36718495 (-) True XLOC_022548
TCONS_00044475 other upstream 776646 36828472 ~ 36828588 (-) True XLOC_022550

Expression Profile

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