RNA id: TCONS_00044438


Basic Information

Item Value
RNA id TCONS_00044438
length 3023
lncRNA type antisense
GC content 0.32
exon number 1
gene id XLOC_022534
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 36092346 ~ 36095368 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCGATGTTTCCCTTCTCTTTTACATGCATCCGATTATTATATGGAGTGTATGTGTACTTTTTTATCTGACCGTAGAACAATCAAGACAGGTAATTATTTCAGAAAGCTTCCCCAGCTGGGATTGGACGCCTGTGGAACACGTGATTGAATTTACCCCCTGAAAAAACTGCACAGCAGATCAATGCGCGCGTTCTCCTGGAACAGCAATGCACTTCGAGCTTGCAGTAAGGTTGCTTAATactaatgttttctttttaaaatgagcGTAAACATAATAAAAGGCTTCGTTTCTAATGTATTATGAGGCAAGTGATTAACGTAGATAGTTATTTGAACTTAAACTGAACAGCAAAGTGTGTGTTAACGGCACTAAAAAGGCACTATTTGTTGGTGTAATCAATCTCTGTCGAGCCAATGCTACTGTGCTGTGGCTAGCCTTGTGCGCATCTCACACTTcacaatgttatttattaaatgcaattagGCAAAAGAAACGGTTATACATGTCTTTCTCAGCTTCAGTATTAATTTATACAATTGAAAAGGACCCAATACAATAATTGTGACAAATATAGGCGCTTGTGTTGTCTAAAGGGTTGCTTTTACGCACTGAAGTCTTATTTTGCTCTAGTTTCAAACAAGTACAATTGGGATATCCCtcataaaatgaaattttaaacaaATCGGGGCGGTGGGAATAGTAAGACGCCCGAAAACGCACCACAACTGCGGCTATATTCGTCAAGTGGTCGTGCATGCTTTTATGTCCTTCAATAAATTTTTACGAGGACCATTTGATTGTTCATAAACGTGTCGTTAATAAAACTGCAGTTGAGTTCCTGGTATAACATAAAACCAACACTACGCTTGTGAAAGAAGTCTCATCAAACCTCTTTCGAGTAGAAGAATGACGGTTCACTACCTCTGTTAGCTCTTAAAATTGCATCTGAGATAAAGATTTGGGACAAATCATCAGTATAACACAGTCAACGTACAATAGTAAAGTATTTATTGACCACTttctttattaatattacattttatgctatttgcatttatttgtaaagattttcTACGTTTACTAATTTTACTGCGATATTTTTGGACAAAACATCTGCATAACACAGCCAACATACGTTAGTAAAGTATTTATTGACCTCTTTTATTATTAAGTGTACATTATATGACATTTGAAATTATTGGTAAAGACTTTCTACATTTATCAAATTCACTacgatattttttttttggacaaaacaTCTGCATAACAGCCTACACACATTAGTAAAGTATTTATTGACCacctttaatattaatataatttttgtgtttgcatttatttgtaaAGACTTTCTACGTTTACCAATTTcaccaagatttttttttggacaaaacaTCTGCATAACACAGTCTACATTAAATTAGTAAAGTATTTATTGACTTCTTTCATTATTAGCATTACTATGCCAGTTGCACTTATTTGTAAAGACTTTCTACGTTTATCAATTTTACTGCAATATTTTGGCCAAATCATCTGCATAACACAGTCAACATACATTAGTAAAGTATTTATTGACCtctttcattattaataatacatttgtttatgGCTTTTGCAATTTTTTTGCAAAGACTTTCTACGTTTATCGATTGTACTGCGACATATTTTGATAAAACATCTGCATAAAACTAGTTACATAAGTTAGTAAAGTGTTTAATGTTCTCTTTCATTATTAACTTTACATTGTCATTTACAATTGTTGCGATTTTGTCAACTACGTTGATGTACTACAGGgcaaatagtattttaaatggaaaaaaaattatatatatatatccctttaTTTTATACCTAAAGCTTTGTGAAATTATTGTACTTGAAgctttgtaaaatatttgtaaatataggtttttattttgtttgcaatttcaagttattaaaactggctcacaaataaacaaaataattggaTCCTAAACATATATCTCAAATAATTTAACGGTGTACTCTTGTCATGCAGAAAATGAATCCGTCTTGAACATTTTACGGTTAACATGCACATTATTATATagcaaatttaagatttttactgAACGTATATTGCGGCACTTGGAAATCTGTGAATTTTTGGGCTGCTGTCATTGTCAGTGTTAGGCCCAGTATGAAACCGGCCACATGAGGTCAGGCTTTTTTTTCCACCCTTCTTTTGTGGGAACATCAGACAAATTAATACATAGACACGTCAAAAACactcgagcaaaaaaaaaaaaaaaaagaaaagttaacaTTACTTTTGTAATACAAACAGTTTTTACAAAACCTTACTGTTTAATTAGTTAAATAGTTTAGAGAATTTTGGCAAAGTAATGGGTGTAATTGTGCACCTTTCAGCAGTAAAAGAACTTATTAAAGTTcttaatttaacataatttaaataaaattaagtacacGCAAGCATACTATATTTAAGCAGTAGCATTTCATTAACTCAATTTGTGGTTTATAAGTAGGTGTGTCAGCTTGTTGATTATGGCGttgatcttatttttttttcttgcgaTACACTGCGGAggcaatataatataaaaacccTGACAGTAGATTTCGCTTTCAGTTTTGTGAAGAGAATTAATCATATGAAGTCTTGGTGGGATGTGGCGTATTGTGGTTATCAATGCATCTTatcaaactaataaattaattacagcgtgACACGTACAGAACAAACATTTAATAGAAAACGTTCAACAACGGcatcatgtctgtgtgtgtgttatgtgcaTACAAGTTTGTATAAAACATTGTCCTGCTTTTATCTGTTTTTTCGAGGGCGTGGTACTTCATGTTAAAGTCGCTTCTATCACCCTTATTATTCACCTTTacgattttttaaatattattttctcttATAATCACCTCTCACAATTGGTTTGGTGTTAAATGATTGTATAAAGCTGTTGTACAGACGCAAAAAAGATGTTTTTAcgctgttttaaaaatgaaaataaaataataaaacca

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0071599 otic vesicle development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1901861 regulation of muscle tissue development biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0016202 regulation of striated muscle tissue development biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0048634 regulation of muscle organ development biological_process
GO:0071696 ectodermal placode development biological_process
GO:0048641 regulation of skeletal muscle tissue development biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0032525 somite rostral/caudal axis specification biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0009790 embryo development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000153910

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044437 lncRNA downstream 4112 36081425 ~ 36088234 (-) True XLOC_022533
TCONS_00044436 lncRNA downstream 40520 36020796 ~ 36051826 (-) True XLOC_022532
TCONS_00045066 lncRNA downstream 423125 35663852 ~ 35669221 (-) True XLOC_022525
TCONS_00045065 lncRNA downstream 426764 35663852 ~ 35665582 (-) False XLOC_022525
TCONS_00045064 lncRNA downstream 542684 35540360 ~ 35549662 (-) False XLOC_022523
TCONS_00044440 lncRNA upstream 14846 36110214 ~ 36228277 (-) False XLOC_022535
TCONS_00044439 lncRNA upstream 14846 36110214 ~ 36249991 (-) False XLOC_022535
TCONS_00045068 lncRNA upstream 14846 36110214 ~ 36277074 (-) False XLOC_022535
TCONS_00045067 lncRNA upstream 14846 36110214 ~ 36277074 (-) False XLOC_022535
TCONS_00044745 lncRNA upstream 14846 36110214 ~ 36277079 (-) False XLOC_022535
TCONS_00044434 mRNA downstream 88905 35983048 ~ 36003441 (-) False XLOC_022531
TCONS_00044433 mRNA downstream 89064 35981839 ~ 36003282 (-) False XLOC_022531
TCONS_00044431 mRNA downstream 270825 35795759 ~ 35821521 (-) True XLOC_022529
TCONS_00044430 mRNA downstream 282345 35795759 ~ 35810001 (-) False XLOC_022529
TCONS_00044429 mRNA downstream 302111 35789183 ~ 35790235 (-) True XLOC_022528
TCONS_00044447 mRNA upstream 201853 36297221 ~ 36306356 (-) False XLOC_022536
TCONS_00044448 mRNA upstream 202791 36298159 ~ 36306006 (-) False XLOC_022536
TCONS_00044449 mRNA upstream 203650 36299018 ~ 36306337 (-) False XLOC_022536
TCONS_00044450 mRNA upstream 203819 36299187 ~ 36303216 (-) False XLOC_022536
TCONS_00044451 mRNA upstream 203838 36299206 ~ 36306006 (-) False XLOC_022536
TCONS_00044435 other downstream 93014 35998547 ~ 35999332 (-) True XLOC_022531
TCONS_00044432 other downstream 227493 35864726 ~ 35864853 (-) True XLOC_022530
TCONS_00044409 other downstream 835901 35244378 ~ 35256445 (-) False XLOC_022519
TCONS_00044402 other downstream 2105981 33978425 ~ 33986365 (-) True XLOC_022514
TCONS_00044400 other downstream 2123358 33968866 ~ 33968988 (-) True XLOC_022513
TCONS_00044457 other upstream 226642 36322010 ~ 36322124 (-) True XLOC_022538
TCONS_00044460 other upstream 318330 36413698 ~ 36418022 (-) False XLOC_022539
TCONS_00044467 other upstream 414629 36509997 ~ 36510119 (-) True XLOC_022543
TCONS_00044471 other upstream 623007 36718375 ~ 36718495 (-) True XLOC_022548
TCONS_00044475 other upstream 733104 36828472 ~ 36828588 (-) True XLOC_022550

Expression Profile

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