RNA id: TCONS_00044444


Basic Information

Item Value
RNA id TCONS_00044444
length 3112
lncRNA type read_through
GC content 0.38
exon number 5
gene id XLOC_022535
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 36110214 ~ 36278596 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

caccaacctatccagcatatattttacgcggatgcccttccagctgcaaccccatcACTgagaacatccatacacactcattcacacacatacactacggacaatttagcttattcaattcacctatagtgcatgcctttgaactgggggaacccggagcacccggagcaaacacACGTAAGCACAAGGAAAAATAAATTAtgagaaatataataaataaataaaaatattattcagagtttgtttttcattcattcattttctttttcggcttagtccctttattaatccggggtcgccacagtggaatgaaccaccagcttatccagcaagtttttacgcagcagatgccctttcagccgcaaaacatctctgggaaacattcacacacacattcacacacacactcatacggacaatttagcctactcaatgtgaacgcagggagaacatgcaaactccacacagaaacgccagctgagccgaggctcaaaccagcgacccagcagccttgttgttgtgaggcgacagaactacctactgcgccactgcttcgcccagagtttgtttttatttactaaattaaatttgagATTATTTGTGTATCAGAAATGTTGCATGTTTCAATAAGCACAAATCCACAGAATGTCAACTAAAATGCATTTCATTATATTTACACTTTACAACAAAACTTGTAAAATCTTAAATGATAAAAGCATTATTAGCATGACAATTAAGTCAGTCTTAACCACCttactttgcaatgtgaaagaaAACTCTTATTAAGGAAATACTTGTTGGGAACATTAAGCAGCATAACAGGCTGTTTTGTAGAGCTGaaaatcaatggaagtcaatagaaaCCAATGGAACACAATTAAGTTCTGTATGCAAGGGCTGGGCCTGCTCTTATGTGAAAAATTAGGTGAATACGCTCTCAAAATGCTAAAATGCTATACAGAACACCCACCAATCTGAGAGTCTCAGAGCGCAAAGCACATCAAAAGATTAGACTTGTTCACTTCCATAAAGCACAACAAATGAGGCAGACTCAGTCTTTGTATGTGCTCTCAAAATCCTTAATTAGTCCATTTGCATATTTTGCAATAAGCCTAAAATAGACCTCATCACCCCATCTTAGTGTTATTTCTGAGTGTTTTTGTACATTGTGTAGCTTATTGTATATGTAATGTATGTTTGTATAGTAAATTgttatgttttctttgtttttgtaaattaaaatatgctgtagtaggtggcggttcattccgctgtggctgaacgaaaatgaatgaataaatgtacttGGTATttatatgagaaagtcttacaAAAAATCCTTGATGTGCACAAATAAgttatgaactatccctttaagaccttGTAATGAATCGTTTGAGTTAACGATTCACTGACTCACAAAAAGACTCGTTTGTCGCCACCTAACGGCGTTACTAAGCAACAAACAGAGATTATTTGAACGAGTCAATCAACAAAAAATATTCAGATTATCAGATCAAAGATTCGAGTCACTTTAGACTCGTTACTTTTAGACCAATCATGTGACTCCAAATGGCGTTCGTCGTGCGAGGAAAAGTCAGCGTGGTCATGCTATCATGTGACGCTGCCTACATAAAACACACTGACTGTTGGGCCGTTGAATGGGGGAGGACAGTTTCCACGTGCTCTTCGCTTCATGGTGGTTGTCAAGACGTTTGACCTCAGTTGAACAGCTCCGGGTAAACAAGTCATCGCAAATGTCCCCTCCCTCAGTTCCAAACAGCTTGCATCCCATCAGCGCGCATGTTTTGCCAGGACAGATGACAGGAAAACAGTCTCAGCTCATGTTCATAATAAGGTAGGTGTAAGAGGACTTTGCCGTTGACTTTTCCTTGTGGTCCTTCTTATACTTCATGCGACGGTTTTGGAACCAGATTTTAATCTGCCGGTCGGTGAGCTTCAGCAGCTCAGCCATTTCAAGTCTCCGGTTGCGGCACAGCCTCACTTGTGGATTTCCAGAGGCCCATGACTGAAGGTCGCAGCTCTAGTTTTTGATCAGCGGAGGACCAGCGGAAATTATTAACATGCTACTTCATAATAACATATCACATAACATTACATAAAAATCTGTTTTTCTGTATTGTTTAAATGTCGTAACATATGACAATAAATGGAATTTTAAAAAGCCTGATGAactgtttctgtatttgtgttttaaaatgactattttttttaacaatcgaTCATTGATATTAATTGGTAAAAGCCACCATACATAGCAAAATTAATGTATTGAATAATTTTGCTAATTAGTAGGTCTATATTCATTTTAAACTTTACCATAATGGCAATAAGCCATTAAAGCACCATTTTAAACATCAATTTATGATGTCATTTATATCAAATGAGCTTTTTACGTACAAATCAACACCAGGAAATGCCAGACACGTTCCCACATGAAAATTAAGATCTGAATTTTATGTGGGTAGTTCTTCCTGACTTTAGGCTCTTTATAATGCCTTGCATATGGAGCAGGCACAAGGTGGCAGTGTTGTTTGATTTAGTCCTAGTGGAATGACAGTGTTGGATGATTGAACAcgtgtgcgagagagagagagatagagagaataTTGTTGATCCTGATTCAGATAATAATAAACGTTAATAGAGGTTAATGAATAATTTGCTATGTAACACAAGTCATTTACAATAAAGGTATGCGATTAGATGAGCAAGAGTAAATCATTGTGTAAACGTTTTTAACACCTTGGTCATTACAAGACGGACACAACCAGAATAGCCTCCATAAGCGTGGATACAAGTTAATAAGTCAAGGAACATTTTGGCTTAATCAAAAACCAACAACATTTCACTCTAAAAAATCACAACTTTCAGtgtaaaaaataacataatgAATAACATGCCATGTAGAAAGAATATATAATAACACAGCAACTCATAACCCCATGAGTGAAAGCCATACTCACAAATTGGCCtggataaatatatttatttctgtaaAAGGCATTACATTCGCCAGTATTCTTCAAATTGCAAAGCTGCATTATAAAGGCATTTACAGTAAACAAAGGCAACGAATGCAGCAGGCTCC

Function

GO:

id name namespace
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0008988 rRNA (adenine-N6-)-methyltransferase activity molecular_function
GO:0016853 isomerase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044438 lncRNA downstream 14846 36092346 ~ 36095368 (-) True XLOC_022534
TCONS_00044437 lncRNA downstream 21980 36081425 ~ 36088234 (-) True XLOC_022533
TCONS_00044436 lncRNA downstream 58388 36020796 ~ 36051826 (-) True XLOC_022532
TCONS_00045066 lncRNA downstream 440993 35663852 ~ 35669221 (-) True XLOC_022525
TCONS_00045065 lncRNA downstream 444632 35663852 ~ 35665582 (-) False XLOC_022525
TCONS_00044461 lncRNA upstream 135102 36413698 ~ 36418063 (-) False XLOC_022539
TCONS_00044746 lncRNA upstream 139556 36418152 ~ 36420157 (-) False XLOC_022539
TCONS_00044747 lncRNA upstream 139573 36418169 ~ 36420154 (-) True XLOC_022539
TCONS_00045078 lncRNA upstream 327148 36605744 ~ 36606760 (-) False XLOC_022544
TCONS_00045079 lncRNA upstream 327148 36605744 ~ 36608323 (-) False XLOC_022544
TCONS_00044434 mRNA downstream 106773 35983048 ~ 36003441 (-) False XLOC_022531
TCONS_00044433 mRNA downstream 106932 35981839 ~ 36003282 (-) False XLOC_022531
TCONS_00044431 mRNA downstream 288693 35795759 ~ 35821521 (-) True XLOC_022529
TCONS_00044430 mRNA downstream 300213 35795759 ~ 35810001 (-) False XLOC_022529
TCONS_00044429 mRNA downstream 319979 35789183 ~ 35790235 (-) True XLOC_022528
TCONS_00044447 mRNA upstream 18625 36297221 ~ 36306356 (-) False XLOC_022536
TCONS_00044448 mRNA upstream 19563 36298159 ~ 36306006 (-) False XLOC_022536
TCONS_00044449 mRNA upstream 20422 36299018 ~ 36306337 (-) False XLOC_022536
TCONS_00044450 mRNA upstream 20591 36299187 ~ 36303216 (-) False XLOC_022536
TCONS_00044451 mRNA upstream 20610 36299206 ~ 36306006 (-) False XLOC_022536
TCONS_00044435 other downstream 110882 35998547 ~ 35999332 (-) True XLOC_022531
TCONS_00044432 other downstream 245361 35864726 ~ 35864853 (-) True XLOC_022530
TCONS_00044409 other downstream 853769 35244378 ~ 35256445 (-) False XLOC_022519
TCONS_00044402 other downstream 2123849 33978425 ~ 33986365 (-) True XLOC_022514
TCONS_00044400 other downstream 2141226 33968866 ~ 33968988 (-) True XLOC_022513
TCONS_00044457 other upstream 43414 36322010 ~ 36322124 (-) True XLOC_022538
TCONS_00044460 other upstream 135102 36413698 ~ 36418022 (-) False XLOC_022539
TCONS_00044467 other upstream 231401 36509997 ~ 36510119 (-) True XLOC_022543
TCONS_00044471 other upstream 439779 36718375 ~ 36718495 (-) True XLOC_022548
TCONS_00044475 other upstream 549876 36828472 ~ 36828588 (-) True XLOC_022550

Expression Profile

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