RNA id: TCONS_00044448


Basic Information

Item Value
RNA id TCONS_00044448
length 1867
RNA type mRNA
GC content 0.44
exon number 6
gene id XLOC_022536
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 36297221 ~ 36306356 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGCAAGGAAAAAGCCGCCGCCGCCTCAGCCTCATTATCCAGCACGAATAGAGAAACGTCGAAAAATATCTCAGGGAGCTCTGAATGCTGTAATCCAGGACTCATCTCTGCTCTTTAGGAGGTCACGCCCAACAATAGAAGACTGTAGttcaaccACTTTCCTCCCCAGACCAGGGAGCCACACAGGTCAAATTTGCTTGTAGTAAAGACTTTCAGAATCAGCCATGGGAAAGAAGAGCCAGAACCGTGAAGATGATGAAGCTGCTTCCTCAGATGAGGAAGAGTACGTTGTGGAGAAGGTCTTGGACAGGAGAGTTGTGAAGGGGCGTGTGGAGTATTTCCTCAAATGGAAAGGCTTTACAGAGAAACACAACACATGGGAACCAGAGAAGAACCTGGACTGTCCAGAGCTTATCTCTGAGTTCATGAAGACCTACAAAAAAGGAAACAGTGCAAGCCCACCAAGCAGCAAGTCCTCCAGTACAGGCCCCTCTTCAGCCCGTCCCAAAGACAGCAGTGGCAGCAGCAGCACCAGCAAGAGGAAAAACTCCGAGGAAGAGAACGGGAGCAGCAGCAAACCCAAGAAGAAAAAGGAGgATGAGATCCTTGTAGCGAGAGGGTTTGAGCGAGGCCTGGAGCCTGAGAAGATTATTGGAGCAACAGACTCCTGTGGAGACCTTATGTTCCTTATGAAGTGGAAGGACTCTGACGAGGCAGACCTTGTGCTTGCAAAAGAAGCCAATCACAAGTGCCCACAGATTGTCATTGCCTTCTACGAGGAGCGTCTGACCTGGCATGAAGACGGAGACAAGAAGGAGAAGAGTGCCACAGCGGTGTAAAGGGCAGAGGTTTGGGAAAGACATACAGTCCTCCAAAACCTTGCACCGATGACACTCTCATAGCCAACTTTTAACGGACCATTTAGAAAACGAAAGGCCAGCGAGTATCGGAGGTTTACTGCCCACCACAACAACCTCCGTCCACCTTCACCAAAACACATCTCTCATCAGACAGAGCGAACGGTGGCTGCGGCAGAGCGGTGGAATGTGGAAAACTCTTACTTCTCTTACTCTCTCTGATCTTCCTTCTGTTTTGTCATGATTTGTGTATTCGTGCCCCTACAACTATGTTCTTATGATGTGTTGTGTGCTAGTGTAGATGTGAAACGATGAAAAAAAACCCGTACATGTCcaacttttaacttttattcgTTCAGATTTCACAGTATTGCGGAACATGACTGAATGAAATCAGTCGAGTTTGCGTTCGTTAACATCTGCAATGCTGGATGAAAAAGCGACGCCAtcgttttttatttacaaaactgCTTCTTAATTGATGCCGTTCgcattttgcttattttttttcccccaatcaAGTAGATTTAAGTTTGCTTTATTgcaattttaactttaaaaaaagtcCTTTGTGGGCCAAATTATCATACGATTTTTATTgggcttgtttgttttttatcagtACATCTACCTAAATGATCTATATCTTATTACCCAGACTAAAATCAGGACATTTGGATAAATTTTAACATCTGtgtaaaaatatcttttaaaatgtcAACCTTGGCCCTTTTTATCCGCTATTCGATCTTATCACTGTTGCTTGCAGGAGGACAGACAATCGTCATCATGTAAGTGTGTAAAGGGACATTTCTATCTATTTCTACACACTTTTCTTCCATGATTTTATTTTCCCTCCATAAAACGGAAGCGATTATACTCCCTCTTGTGGCTGATTTGCTGAACACATTCCCTGTTTGACCTCATTCACACATAGTTCAAGCATTGTCGGGttcttatattacttttttaacctAGAGTTGATTCAATAAAATGGTGTTTATCAAGGT

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-030131-5553 Predicted to be located in nucleus. Is expressed in somite. Orthologous to human CBX5 (chromobox 5).

Ensembl:

ensembl_id ENSDART00000086985

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045077 lncRNA downstream 19563 36110214 ~ 36278596 (-) False XLOC_022535
TCONS_00044444 lncRNA downstream 19563 36110214 ~ 36278596 (-) True XLOC_022535
TCONS_00044445 lncRNA downstream 20956 36110214 ~ 36277203 (-) False XLOC_022535
TCONS_00045076 lncRNA downstream 20992 36110214 ~ 36277167 (-) False XLOC_022535
TCONS_00044461 lncRNA upstream 107692 36413698 ~ 36418063 (-) False XLOC_022539
TCONS_00044746 lncRNA upstream 112146 36418152 ~ 36420157 (-) False XLOC_022539
TCONS_00044747 lncRNA upstream 112163 36418169 ~ 36420154 (-) True XLOC_022539
TCONS_00045078 lncRNA upstream 299738 36605744 ~ 36606760 (-) False XLOC_022544
TCONS_00045079 lncRNA upstream 299738 36605744 ~ 36608323 (-) False XLOC_022544
TCONS_00044434 mRNA downstream 294718 35983048 ~ 36003441 (-) False XLOC_022531
TCONS_00044433 mRNA downstream 294877 35981839 ~ 36003282 (-) False XLOC_022531
TCONS_00044431 mRNA downstream 476638 35795759 ~ 35821521 (-) True XLOC_022529
TCONS_00044430 mRNA downstream 488158 35795759 ~ 35810001 (-) False XLOC_022529
TCONS_00044429 mRNA downstream 507924 35789183 ~ 35790235 (-) True XLOC_022528
TCONS_00044455 mRNA upstream 5575 36311581 ~ 36316352 (-) False XLOC_022537
TCONS_00044456 mRNA upstream 5587 36311593 ~ 36313431 (-) True XLOC_022537
TCONS_00044458 mRNA upstream 95566 36401572 ~ 36418708 (-) False XLOC_022539
TCONS_00044459 mRNA upstream 98928 36404934 ~ 36418059 (-) False XLOC_022539
TCONS_00044462 mRNA upstream 118762 36424768 ~ 36441693 (-) False XLOC_022540
TCONS_00044435 other downstream 298827 35998547 ~ 35999332 (-) True XLOC_022531
TCONS_00044432 other downstream 433306 35864726 ~ 35864853 (-) True XLOC_022530
TCONS_00044409 other downstream 1041714 35244378 ~ 35256445 (-) False XLOC_022519
TCONS_00044402 other downstream 2311794 33978425 ~ 33986365 (-) True XLOC_022514
TCONS_00044400 other downstream 2329171 33968866 ~ 33968988 (-) True XLOC_022513
TCONS_00044457 other upstream 16004 36322010 ~ 36322124 (-) True XLOC_022538
TCONS_00044460 other upstream 107692 36413698 ~ 36418022 (-) False XLOC_022539
TCONS_00044467 other upstream 203991 36509997 ~ 36510119 (-) True XLOC_022543
TCONS_00044471 other upstream 412369 36718375 ~ 36718495 (-) True XLOC_022548
TCONS_00044475 other upstream 522466 36828472 ~ 36828588 (-) True XLOC_022550

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_02166796_02171151.mRNA True 1643 mRNA 0.42 4 CI01000001 2166796 ~ 2172179 (+)