Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00044449 |
| length | 1264 |
| RNA type | mRNA |
| GC content | 0.48 |
| exon number | 5 |
| gene id | XLOC_022536 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007134.7 |
| NCBI id | CM002907.2 |
| chromosome length | 46223584 |
| location | 36297221 ~ 36306356 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0005634 | nucleus | cellular_component |
| id | description |
|---|---|
| ko03036 | Chromosome and associated proteins |
| id | description |
|---|---|
| ZDB-GENE-030131-5553 | Predicted to be located in nucleus. Is expressed in somite. Orthologous to human CBX5 (chromobox 5). |
| ensembl_id | ENSDART00000142760 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00045077 | lncRNA | downstream | 20422 | 36110214 ~ 36278596 (-) | False | XLOC_022535 |
| TCONS_00044444 | lncRNA | downstream | 20422 | 36110214 ~ 36278596 (-) | True | XLOC_022535 |
| TCONS_00044445 | lncRNA | downstream | 21815 | 36110214 ~ 36277203 (-) | False | XLOC_022535 |
| TCONS_00045076 | lncRNA | downstream | 21851 | 36110214 ~ 36277167 (-) | False | XLOC_022535 |
| TCONS_00044461 | lncRNA | upstream | 107361 | 36413698 ~ 36418063 (-) | False | XLOC_022539 |
| TCONS_00044746 | lncRNA | upstream | 111815 | 36418152 ~ 36420157 (-) | False | XLOC_022539 |
| TCONS_00044747 | lncRNA | upstream | 111832 | 36418169 ~ 36420154 (-) | True | XLOC_022539 |
| TCONS_00045078 | lncRNA | upstream | 299407 | 36605744 ~ 36606760 (-) | False | XLOC_022544 |
| TCONS_00045079 | lncRNA | upstream | 299407 | 36605744 ~ 36608323 (-) | False | XLOC_022544 |
| TCONS_00044434 | mRNA | downstream | 295577 | 35983048 ~ 36003441 (-) | False | XLOC_022531 |
| TCONS_00044433 | mRNA | downstream | 295736 | 35981839 ~ 36003282 (-) | False | XLOC_022531 |
| TCONS_00044431 | mRNA | downstream | 477497 | 35795759 ~ 35821521 (-) | True | XLOC_022529 |
| TCONS_00044430 | mRNA | downstream | 489017 | 35795759 ~ 35810001 (-) | False | XLOC_022529 |
| TCONS_00044429 | mRNA | downstream | 508783 | 35789183 ~ 35790235 (-) | True | XLOC_022528 |
| TCONS_00044455 | mRNA | upstream | 5244 | 36311581 ~ 36316352 (-) | False | XLOC_022537 |
| TCONS_00044456 | mRNA | upstream | 5256 | 36311593 ~ 36313431 (-) | True | XLOC_022537 |
| TCONS_00044458 | mRNA | upstream | 95235 | 36401572 ~ 36418708 (-) | False | XLOC_022539 |
| TCONS_00044459 | mRNA | upstream | 98597 | 36404934 ~ 36418059 (-) | False | XLOC_022539 |
| TCONS_00044462 | mRNA | upstream | 118431 | 36424768 ~ 36441693 (-) | False | XLOC_022540 |
| TCONS_00044435 | other | downstream | 299686 | 35998547 ~ 35999332 (-) | True | XLOC_022531 |
| TCONS_00044432 | other | downstream | 434165 | 35864726 ~ 35864853 (-) | True | XLOC_022530 |
| TCONS_00044409 | other | downstream | 1042573 | 35244378 ~ 35256445 (-) | False | XLOC_022519 |
| TCONS_00044402 | other | downstream | 2312653 | 33978425 ~ 33986365 (-) | True | XLOC_022514 |
| TCONS_00044400 | other | downstream | 2330030 | 33968866 ~ 33968988 (-) | True | XLOC_022513 |
| TCONS_00044457 | other | upstream | 15673 | 36322010 ~ 36322124 (-) | True | XLOC_022538 |
| TCONS_00044460 | other | upstream | 107361 | 36413698 ~ 36418022 (-) | False | XLOC_022539 |
| TCONS_00044467 | other | upstream | 203660 | 36509997 ~ 36510119 (-) | True | XLOC_022543 |
| TCONS_00044471 | other | upstream | 412038 | 36718375 ~ 36718495 (-) | True | XLOC_022548 |
| TCONS_00044475 | other | upstream | 522135 | 36828472 ~ 36828588 (-) | True | XLOC_022550 |
