RNA id: TCONS_00044461


Basic Information

Item Value
RNA id TCONS_00044461
length 470
lncRNA type sense_over
GC content 0.38
exon number 3
gene id XLOC_022539
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 36401572 ~ 36420157 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACACTTCCGGTAACGTTTCCTGTGTTtgtaaactgaagaaaaaaaaaattgtccgaCAAGAAAATATTGGGCTACAATAAAAGACGAAGAGTAAGGCTCGGGCCCCTGATGATTGGGGCTTGTGTGGTCTCTAAACATTGTCCCAGCCCAGagccccaacacacacacacacactctcagcacTGAGATGTCACACCATTCCAACAGCACAGTGCGAGATCACATGAAATGGTCTGGAGTCTCTCTGTGACGCATAATGGCCACTGATTTTGTGCTAATCATGGGATGGACCACACAAAAATTATGCCAAGAACATATTTACATTTTGGAGAAAATTATCTCTTTTGGGAtagattgttatttttattgaaattatgAAATGCAGTTTTGTACAttagagtatttttttttagctattttagGTGATAGATTTTTAATACTGcaataaacagaaatatttctGTACCAA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045077 lncRNA downstream 135102 36110214 ~ 36278596 (-) False XLOC_022535
TCONS_00044444 lncRNA downstream 135102 36110214 ~ 36278596 (-) True XLOC_022535
TCONS_00044445 lncRNA downstream 136495 36110214 ~ 36277203 (-) False XLOC_022535
TCONS_00045075 lncRNA downstream 136531 36110214 ~ 36277167 (-) False XLOC_022535
TCONS_00045076 lncRNA downstream 136531 36110214 ~ 36277167 (-) False XLOC_022535
TCONS_00044746 lncRNA upstream 89 36418152 ~ 36420157 (-) False XLOC_022539
TCONS_00044747 lncRNA upstream 106 36418169 ~ 36420154 (-) True XLOC_022539
TCONS_00045078 lncRNA upstream 187681 36605744 ~ 36606760 (-) False XLOC_022544
TCONS_00045079 lncRNA upstream 187681 36605744 ~ 36608323 (-) False XLOC_022544
TCONS_00045080 lncRNA upstream 187681 36605744 ~ 36608783 (-) True XLOC_022544
TCONS_00044455 mRNA downstream 97346 36311581 ~ 36316352 (-) False XLOC_022537
TCONS_00044456 mRNA downstream 100267 36311593 ~ 36313431 (-) True XLOC_022537
TCONS_00044447 mRNA downstream 107342 36297221 ~ 36306356 (-) False XLOC_022536
TCONS_00044453 mRNA downstream 107357 36301201 ~ 36306341 (-) False XLOC_022536
TCONS_00044449 mRNA downstream 107361 36299018 ~ 36306337 (-) False XLOC_022536
TCONS_00044462 mRNA upstream 6705 36424768 ~ 36441693 (-) False XLOC_022540
TCONS_00044463 mRNA upstream 7050 36425113 ~ 36439961 (-) True XLOC_022540
TCONS_00044464 mRNA upstream 24959 36443022 ~ 36446307 (-) False XLOC_022541
TCONS_00044465 mRNA upstream 24959 36443022 ~ 36449111 (-) True XLOC_022541
TCONS_00044466 mRNA upstream 79455 36497518 ~ 36592436 (-) True XLOC_022542
TCONS_00044457 other downstream 91574 36322010 ~ 36322124 (-) True XLOC_022538
TCONS_00044435 other downstream 414366 35998547 ~ 35999332 (-) True XLOC_022531
TCONS_00044432 other downstream 548845 35864726 ~ 35864853 (-) True XLOC_022530
TCONS_00044409 other downstream 1157253 35244378 ~ 35256445 (-) False XLOC_022519
TCONS_00044402 other downstream 2427333 33978425 ~ 33986365 (-) True XLOC_022514
TCONS_00044467 other upstream 91934 36509997 ~ 36510119 (-) True XLOC_022543
TCONS_00044471 other upstream 300312 36718375 ~ 36718495 (-) True XLOC_022548
TCONS_00044475 other upstream 410409 36828472 ~ 36828588 (-) True XLOC_022550
TCONS_00044482 other upstream 541728 36959791 ~ 36959912 (-) True XLOC_022554
TCONS_00044489 other upstream 859010 37277073 ~ 37280713 (-) True XLOC_022558

Expression Profile

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