RNA id: TCONS_00044747


Basic Information

Item Value
RNA id TCONS_00044747
length 335
lncRNA type sense_over
GC content 0.45
exon number 3
gene id XLOC_022539
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 36401572 ~ 36420157 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGATGATAAAGAGCAGTTTATTGAAGAATCTTAGATAAATCCAACAAGTGTTTTTACaccacaagcaacagcaatggaaaaCTTCACAACATTGTCCAGATTTcgcagtgattggttgcagctggaaggtcatccgccaattcatctacagcacatgtctttggactgtgggggaaactggagcacccggaggaaacccacgccaacacgggaagaacatgcaaattccacacagaaacgccaactgacccagccgaggctcgaaccagcaacctcttTGCATCTTCCCAAATATGAAATAAACGTCAAATGTCGTAAGCAGCTCGACCTTTTAC

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044461 lncRNA downstream 106 36413698 ~ 36418063 (-) False XLOC_022539
TCONS_00045077 lncRNA downstream 139573 36110214 ~ 36278596 (-) False XLOC_022535
TCONS_00044444 lncRNA downstream 139573 36110214 ~ 36278596 (-) True XLOC_022535
TCONS_00044445 lncRNA downstream 140966 36110214 ~ 36277203 (-) False XLOC_022535
TCONS_00044443 lncRNA downstream 141002 36110214 ~ 36277167 (-) False XLOC_022535
TCONS_00045078 lncRNA upstream 185590 36605744 ~ 36606760 (-) False XLOC_022544
TCONS_00045079 lncRNA upstream 185590 36605744 ~ 36608323 (-) False XLOC_022544
TCONS_00045080 lncRNA upstream 185590 36605744 ~ 36608783 (-) True XLOC_022544
TCONS_00045081 lncRNA upstream 330784 36750938 ~ 36754685 (-) False XLOC_022547
TCONS_00045082 lncRNA upstream 333548 36753702 ~ 36754274 (-) True XLOC_022547
TCONS_00044459 mRNA downstream 110 36404934 ~ 36418059 (-) False XLOC_022539
TCONS_00044455 mRNA downstream 101817 36311581 ~ 36316352 (-) False XLOC_022537
TCONS_00044456 mRNA downstream 104738 36311593 ~ 36313431 (-) True XLOC_022537
TCONS_00044453 mRNA downstream 111828 36301201 ~ 36306341 (-) False XLOC_022536
TCONS_00044462 mRNA upstream 4614 36424768 ~ 36441693 (-) False XLOC_022540
TCONS_00044463 mRNA upstream 4959 36425113 ~ 36439961 (-) True XLOC_022540
TCONS_00044464 mRNA upstream 22868 36443022 ~ 36446307 (-) False XLOC_022541
TCONS_00044465 mRNA upstream 22868 36443022 ~ 36449111 (-) True XLOC_022541
TCONS_00044466 mRNA upstream 77364 36497518 ~ 36592436 (-) True XLOC_022542
TCONS_00044460 other downstream 147 36413698 ~ 36418022 (-) False XLOC_022539
TCONS_00044457 other downstream 96045 36322010 ~ 36322124 (-) True XLOC_022538
TCONS_00044435 other downstream 418837 35998547 ~ 35999332 (-) True XLOC_022531
TCONS_00044432 other downstream 553316 35864726 ~ 35864853 (-) True XLOC_022530
TCONS_00044409 other downstream 1161724 35244378 ~ 35256445 (-) False XLOC_022519
TCONS_00044467 other upstream 89843 36509997 ~ 36510119 (-) True XLOC_022543
TCONS_00044471 other upstream 298221 36718375 ~ 36718495 (-) True XLOC_022548
TCONS_00044475 other upstream 408318 36828472 ~ 36828588 (-) True XLOC_022550
TCONS_00044482 other upstream 539637 36959791 ~ 36959912 (-) True XLOC_022554
TCONS_00044489 other upstream 856919 37277073 ~ 37280713 (-) True XLOC_022558

Expression Profile

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