RNA id: TCONS_00044465


Basic Information

Item Value
RNA id TCONS_00044465
length 1765
RNA type mRNA
GC content 0.39
exon number 4
gene id XLOC_022541
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 36443022 ~ 36449111 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCGGATGAAGTGTGGATGAGGCATCGAGCGCTTCTCTCCGAGccttaatgTTCTGATTTAAGATCAGTATCAAATCAAGCACACAAAAGGCAATGGATGGAGCAGTAGATGGCACCAAGCTCATTCAGAGACACAAGCTAGAGCTATTAGAAGCTCTGATTGAAGATCCAGACTTTCTTCTTCAGCATTGTCATGCTCGTGGCATACTATCAAACAATGAGTACAACAACATTAAAGACATTAACACACGCTCAAAACAGGCACGGGACATCTTGGATTATGTCATTCTCAAAGACAACAAGCATGCTCTGACTTTCCTGAAGTTGCTGAAAACACCAGAAATCCAAGAGACTTTTCCGAAACTACATTTCCTTCAAAATCTGCCAAACAACAAACGCAAAACGACAAAAAACACAGAGACGACAGCAAAGCGAAGATCGCAAATGGAAAACGATGCACTGAAGGAGCAGCGCCGTGTAATCAATTCCAGGATGGTGAGAGAGAGTGAGATGATGAAGGTGGCCGGCTGCATTGGAAACAACTGGAGACAGGTTGGCATAATGGCACTCGATATGACCACCACCACGCTTGAGCAGATAGAGGAGGACAACAAACTGCACAAAGAGCGGGTTTTCGCCATGCTGCGGAGGTGGAGCATGCGCGAGAGGGAAAAAGCCACACCTGCTCGTCTCTATTGCCTTCTAACACAAGAAGAGGAGAACGGCATCAACTCAGAAGATCTCAACTTCCTGATGGAAAACAACTGAGGACTTGATTTATGTAGCACTTTGAAAAACAAACCACTAGAGGGAGACATAACTGCTAGTcagttattttttgtgttttgttttgttggtcaGCTTCTGGAAATGATTGGGAAACGTCCAAGCGCACTAAGCTATTATGCGGGTATTTGACTGCTCGTTTTTCCTAAAATCCGACCCCATTGTTTGTAGATTATTTGAAAATATGCTTAgatatttagctttgtttttttaaaggagcAGGACTGAGTAAACAGTGTGAAgttttatttcaatatatttttttatggcaTTATTACATGTTAAGCTTATTTCCATGCAAAACATAGCACTTCAGTGTATACGTGCAGCTTTAAATTTTATCCTAATAATTTCAGGTGATACCGTAGCATTCCATCATGATACAttcttaaaaacaataataatgcatttgcTTTAAGTAAATGAATGTGAAAGCTTTTatcttaagtcttaaaaacttGAACCGATTCCATGAACAGATAAGGACGTCTGGTGTTTATGACAGAAGTTTTAGGTTCCAATAGAGACCGCTATCTGGCAACATAACGGCAACCTTCGCTCTCTCGGCAAGTATCACGTTGTTTCACCCTGATGCATTTTCACCCTGGGTTTTCACCCTTGTTCACCCTTGTTCACCCTTATTTTGCATGCCAAGCAGGTGATAGGATGGGAGGCGGAGCTTTGTACTATTCCACTGCGAGTTCTTAAACAGCATCAAGTCTTGTCTGACTTCATGGAATCTTTTACTTTtggaaacattgttttttttttttatttaattgattgcaATTTGATGCGAGAGCAGAGATTTCAAATGTAATGTCATGATTATATTAATTGGACTCTTATGTTAAATTCTCCTTgaactttatttgtttttgtacttTATATTTGTCATTAATCATGCTTCTGGTGATGGTTTGTTTCTTTTGTACGAAACTAAAGAGAATTAAATGATTGTCATTGAGATGTGAAAGG

Function

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0007165 signal transduction biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6125 Predicted to act upstream of or within regulation of apoptotic process and signal transduction.

Ensembl:

ensembl_id ENSDART00000110478

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044746 lncRNA downstream 22865 36418152 ~ 36420157 (-) False XLOC_022539
TCONS_00044747 lncRNA downstream 22868 36418169 ~ 36420154 (-) True XLOC_022539
TCONS_00044461 lncRNA downstream 24959 36413698 ~ 36418063 (-) False XLOC_022539
TCONS_00045077 lncRNA downstream 164426 36110214 ~ 36278596 (-) False XLOC_022535
TCONS_00044444 lncRNA downstream 164426 36110214 ~ 36278596 (-) True XLOC_022535
TCONS_00045078 lncRNA upstream 156633 36605744 ~ 36606760 (-) False XLOC_022544
TCONS_00045079 lncRNA upstream 156633 36605744 ~ 36608323 (-) False XLOC_022544
TCONS_00045080 lncRNA upstream 156633 36605744 ~ 36608783 (-) True XLOC_022544
TCONS_00045081 lncRNA upstream 301827 36750938 ~ 36754685 (-) False XLOC_022547
TCONS_00045082 lncRNA upstream 304591 36753702 ~ 36754274 (-) True XLOC_022547
TCONS_00044462 mRNA downstream 1329 36424768 ~ 36441693 (-) False XLOC_022540
TCONS_00044463 mRNA downstream 3061 36425113 ~ 36439961 (-) True XLOC_022540
TCONS_00044458 mRNA downstream 24314 36401572 ~ 36418708 (-) False XLOC_022539
TCONS_00044459 mRNA downstream 24963 36404934 ~ 36418059 (-) False XLOC_022539
TCONS_00044455 mRNA downstream 126670 36311581 ~ 36316352 (-) False XLOC_022537
TCONS_00044466 mRNA upstream 48407 36497518 ~ 36592436 (-) True XLOC_022542
TCONS_00044468 mRNA upstream 211639 36660750 ~ 36670369 (-) True XLOC_022545
TCONS_00044469 mRNA upstream 226096 36675207 ~ 36724575 (-) True XLOC_022546
TCONS_00044470 mRNA upstream 261913 36711024 ~ 36753195 (-) False XLOC_022547
TCONS_00044472 mRNA upstream 367375 36816486 ~ 36857964 (-) False XLOC_022549
TCONS_00044460 other downstream 25000 36413698 ~ 36418022 (-) False XLOC_022539
TCONS_00044457 other downstream 120898 36322010 ~ 36322124 (-) True XLOC_022538
TCONS_00044435 other downstream 443690 35998547 ~ 35999332 (-) True XLOC_022531
TCONS_00044432 other downstream 578169 35864726 ~ 35864853 (-) True XLOC_022530
TCONS_00044409 other downstream 1186577 35244378 ~ 35256445 (-) False XLOC_022519
TCONS_00044467 other upstream 60886 36509997 ~ 36510119 (-) True XLOC_022543
TCONS_00044471 other upstream 269264 36718375 ~ 36718495 (-) True XLOC_022548
TCONS_00044475 other upstream 379361 36828472 ~ 36828588 (-) True XLOC_022550
TCONS_00044482 other upstream 510680 36959791 ~ 36959912 (-) True XLOC_022554
TCONS_00044489 other upstream 827962 37277073 ~ 37280713 (-) True XLOC_022558

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_02084996_02088477.mRNA True 1530 mRNA 0.41 3 CI01000001 2084996 ~ 2089332 (+)