RNA id: TCONS_00044468


Basic Information

Item Value
RNA id TCONS_00044468
length 5482
RNA type mRNA
GC content 0.42
exon number 3
gene id XLOC_022545
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 36660750 ~ 36670369 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGACCCCACTGAATCTAAAAAAGATTGTAACcgacaaaatttaatttaaaatcattttacatgTTAAAAATGGTTATAGTTCATGTTTTAATAAAGTCTTTTGATAGTTAAAAATCCAATTTCCTCATTTAGCAGTAAAACTGACTCTTTGCAACACAATATTAGCCTAAATAAACATGTTTCCTAGTGAAACGTTGACGTTTATTGCATAGGATAACAAGTTTCTCCATTTGAGGCGCTCCTTCCCTCTGCTTTGGTGTTGAATTTTTTTAGTCCTTTATGAGAAAATGGTcgtgttttaaaaaacatatcaAGCACTTAGACTGCATTTTGGCCATCACACACGCGTTCTAAATCAACCGAGTGATCTAGGTAGCCAGCTCACTAGGTATTGAGACACCGCCCGTGTCTATGCATGGACGACTGTCTGGGCTAACAGGACCCGATTGAGATTATTAACCTTACGCAATCTAGCAGCACTATATGGTCCACATCCTGGCTTTGGTCAACATTGGCAGGCATGCGGATCAGGCTGCAGGGCTCCGGCCACGCGGCCCGTCTCCTCTCCGAGCTCAACCGCTGCCGCCTGTCTCGCCTCCTCTGTGACATCATCCTCCAGGTCGGGGGGCGCTCTTTTCCGGCTCATCGCGCAGTCTTAGCATGTTCCTGCACGCACTTCAACAGCCTCTTCTCCAGATGCTCCAGCAGCCAGGGTGCCGTTCCCACCACCTTCTCTGTGGATTTCGTCTCGGCCTCCAATTTCGAGAAGGTGCTGACGTTTATCTACACGGGGGAGATTTTCACAGACTTGATCGATGTGGGTGTGTTGTATGAGTTGGCGGAAAGGCTCGGCGTGAGGGAGTTGGTGAACGCTTGCCACGCCACCTTTCCTGACCTACAAAGCTCCAGCTCTGGAAACACCACAGGCGATGGAGACTTGGAGAGTGATATGGTGTCTACTAATGCGGTGGCTGCATCCGTTTGCTCGTCTTCCGCAGCGTCCTGCTCTTCCCTGTCGTCTTCAGCCGCTCCAACACCTGTAACTCCATCTCCAGTTTCCCAGGTCAGAAACGGCAGGTTGAATCGATCCCATCTGGCCGCACAATCACCAAAAAACGAAGACTTGCAGGTACATTTGGGTTACAGCCAACAGGAAATAAACAAGCCAAGCCCGTCAGATAGTAACCGTTCTGCAGACACCCTTCCAGGCCTCACTTTGCAGCTCAAGCAAGAGGATGAAGAAGACGATGATGAAGAAAATAGGGGAAGTAACTCAGTAGACCAGGTTGTCATTAATGGTAGCAAACCAACATTTGGGGCTCAGGAAACATGTTCAGTTCCTGATTCTTCAGCTCAGGTTGTTGGAGAAACCTGCGCTCCTTCATCATCCTCCATTGACCCGTTGGATAGTTTGCAACTTAGTGCTGTTGCAGGACCAATCAAAGAGTCCGATTTTTTTGAGGAAGATGATGCTAGGAAGAGGTCAAGTGTTCAGGAGGAGCAGACGGAGAGTGGTGATCAATGGCGAGCTCTTTCTGAGGACATCATTGAGCTGAGTGACGAAGAGGAACACTTTATAGTGGAGGAGGAGGACGACGAGGACTTGATGTGTATTGAGAACGGTGAAAATGGTGCATCTCTTGGGCAGATGTCTCCATCTCTGCCGTGTAAATCATGTGGGATGCTGCTTCCCGCAGAAAATGGCATCATTCGGACTCATGCGGAGACGCACCTTTCGGATTCGGGTTCTTGTCAGGTGTGTGGCGCATCCTTCTCGGACCGTGCCGCTGGTGTTGCACATGCACTCACTCATGTGGGCATCTTGCTCTTCTCGTGTGACGTTTGCGAGCACCAGTTTAGGACTGAGATGGCGCTGATTCACCACAGACGTCAGTCAGCAGCCAAATGTGTCCCGCAAAACCCTGAGCAGATGAACGGAGCCGCCCAAAGGCAAGGAGGGGAACTGCAGTGCGCCGTCTGTGCTAAATCCATAGCCAATGACTTCAAGGCTGTCAGAGACCACGTCCAGAGCCACGCATGCTTAAGGACATTGCGCTGTGGAGTGTGCCAGCTCTCTCAGCCCTCACGTTGCGCCCTCCTGtggcacacactcacacacctcttTCCTATTTACACCTGTCCACAATGCTCCAGCCCCTTCCTAGAGAGCTCTCAGCTGGACCGGCACCTGTCTCTACATGCGGAGGAAGAAGAAGCTTCAATGAAACAAGTCGACGGCAGTCCGGAGACCAGCGGAGAAGGCCAGGCCGAGCTGCGATGCTTTCTGTGCCCACAAACCTTCCGCTCTGAGGCGGCGTTTCATTACCATCTCAGCATGCATACAAACGAGCTCCAGGGCGGTCAGGTATGGCCAGGAAAACGCAAGGCAGACCAGCTTCTTGAATACTCCTCGTCCTCCAGTTCTCCTTTAGAGCCGGGCGGTTCCGGTAAAGGAGGTTTTAATGTAGGTTTCAACCTACAGGACAAAATAGCTCCCGGTGGACATTTCCCAACCGGACTTGTTTTAAATGGCAATTCCATCGGAGCCGCAGGGCTTAGAGAAAAATTATATCGTTGTCGTTATTGCGGTAAACATTTCGCACACTCGGGCGAGTTTACCTATCACCTCCGAATTCATACAGGTGAGAAACCGTATCAGTGCAAAGTATGTCTACGGTTTTTCCGTGGCCGTTCCACCATGATCTGCCACCTGAAGACGCACTCGGGTGCGCTCATGTACCGCTGCACCGTCTGCGGGCTGTTTTTCTCCACACTTAAGATGGTTTCTTCGCACATGGAGGTCCATAAAGACCAGCTGCCAGCCGATTTTAACATTGAGGAGACCTTTATGTATAACGACCACTCTAAAGACCCCGTCCCAAATCTGGACACCTGAAAAACAGCTGAAAATCTCTCCGTCACACTGTGTGCCCGGTTTACTTACTCAGTTTGTCGTTGAGGATGAGTAGACTTAGAATGTAATAACTCCGTGTTTGGTGTGTTTGTGTCGTCGTGTGCagaaccctttttttttttaaagattaaattaaaGGCAGATCTTTATTTTAAGAGATGTAATGCTAATACTTGACCACTTGATGGCAAGAGAGACACATTGGAAATCAAACTTTTTTGAAAGCaccttgtttttttaaatatattttctcatGCCTTCTTCTTTACATTTTAGAGTCTCTGCATAGTCATAACTAAAATAAACATATCAAAAGTATCTTTTACTGTAGCTTTTCAAACTTTTGCCAAGAATACAGTGAGTTGTTTGACCAAACAGCACTTTTTGGCTGCTTTTCATTCTCTTATCTGTTCTAACTCATTCATTTAAAGTGAAATTTGTTCCTAAAATAAGTTTAGGTCATTAATATAAACACGGGTCATACTTTGATGGTTCATTGGTTAAATttatgttacattgcatctacatgtcaactaattctctaTTTCTAACTAATAGTTCACTGTCAGTTTAGTGAAAGTTGACAtgaacttgcaaagtttcttacagtcagttgAATATCTgtttgaaggagcagtatcagcaaatattaagcagacagtctactaatagtcaaatggaccatcaaaataaaatatagagcTAGCTGCCTTAGCAAGTGCAATTTAATCCACTAAAGAAgacagtttgttttggtaatctttgaTCAacgtctgaccatttgcttctgtgtttggagtggCAGTCCTTCTGACTTCAACCACATTagtcttagccacgcccctctaaccattagtttgctatttgtggatgatgtgcaaaaagaaagccccgccccctactcaatattcagttttagttggaagtacatcaacatactgaaaaaaaaagtctcagcaacttccaatTCATACCAGTAACCATAAACTACTAAAGTTTCAGCTAAATCTGTACTGATGGACTACTGAAGAAGAAAAGTCACCCACATTGGATGAGCTAGGGAGTTCAGATTAACTCCAACAAATTCAGCCAAACGTCTCCAAAGTCGCATTTATGTTTTATCTCTTTATTGGGCTAAGAAAAATTTCAAATATGGTAACTTTAATGacttttattacaatataatatgttttttagACACAAAAGTCTTTTAATAACGTCCAGTAACACTCCATGGGTTTTAATATCTCAGTGAGTGGCCTATAAAGGGTTAATCCAACTCATCTTTAACAGGATGTCCAAGTGCTGATGTGCAATTACCTCTATTTACTCTTCCGGCAGTCTTTCACAATAAGCTAAGGCTCTAGAGAAGCACAAACGCAAGTGAGCGTTGAGAATAAACCAACTTTGTTTCTActttttctgataaatacagcAGTGCTCTAGGTCAAGGATATAAAAAGggtcactttttaaataaataaataaataaaggtacttTTCTGTTACAGAATAGCTGTTATTTTTATAGTAGTGTTAAGTATCATTTAGAAATAGCAACTGGTTTTTGAGATGCAGTACCATAGAGTTTGTATAGTCTGTTgtacataaataattttttaacaccatcAATGAACGTTATTTGGAAAATAAGGGATTTAGACTGAGGTGCTAATATATCAGTTGTTTCTTACGGCAGTGTTCACTTTCTCGGTACATTTTATGTTAGTTTACATGTTTCAGTACAAACCGTGTTGTCATGTGGGAAAGAATATAGGCTCTCTTCTGAATGCTGAGATGTTTTTCTGTACCATTTCCAAGCAGTTATATGCCTTTTATTCAGTATGTCTCTTTTTTATGTATAAATGGGACAGGTTTTAttattactgtacattttaatttcactttaaaaCCAGTTTGTCACACTGGTCCATTCATGACGTAATGTCACtggtcaacaacaacaacaacaaagcgtGTTTTCAAAATTAATGGGACAGTGTTGTGATAGCTTTATTTGAAATGTAGCACAGAAAAATACTGGCTGAACAGAACAGCCTTATAAATTGCCAAGTGTTTTCAAATATTCCATCACGTTTTATCAATCAGTCACTTTTTTAGGgcaaaaaaatgcatattatagtTTTTATCATGGTATGTAGGAGACAGACATCTTTATCGACTCTCATTTGTGTTAAATTTCAGGTCCTTTTTGTACTATATTTTACTTTCAACATAAAATAATTGCCTTATATTACTTGtgttatttatatgatttataaatcGGTTCAAATGTCAGTATCAGAAATCTGTTTTACAACAGTTGTACTTGTGTTCTGAATAAACAAACTGTACTTACAAAACTAGTCAATGAGTCATTTTAAAGCTGCCatactgcattggtttaataagttaaattgttgtCTGATATTTACATAGTAGGTTTATAGCTTTGGTATGGTCCAAAATGTGTCCCATAcataagctcatttgtcctattttgactgatACAGTGCATACGGAAAGAATTCATAGCGCTTcaatttttccacttttttatcttacag

Function

GO: NA

KEGG:

id description
ko03000 Transcription factors
ko04121 Ubiquitin system

Ensembl:

ensembl_id ENSDART00000006881

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045080 lncRNA downstream 51967 36605744 ~ 36608783 (-) True XLOC_022544
TCONS_00045079 lncRNA downstream 52427 36605744 ~ 36608323 (-) False XLOC_022544
TCONS_00045078 lncRNA downstream 53990 36605744 ~ 36606760 (-) False XLOC_022544
TCONS_00044746 lncRNA downstream 240593 36418152 ~ 36420157 (-) False XLOC_022539
TCONS_00044747 lncRNA downstream 240596 36418169 ~ 36420154 (-) True XLOC_022539
TCONS_00045081 lncRNA upstream 80569 36750938 ~ 36754685 (-) False XLOC_022547
TCONS_00045082 lncRNA upstream 83333 36753702 ~ 36754274 (-) True XLOC_022547
TCONS_00045083 lncRNA upstream 197676 36868045 ~ 36869244 (-) True XLOC_022551
TCONS_00044748 lncRNA upstream 326835 36997204 ~ 37000484 (-) True XLOC_022555
TCONS_00044492 lncRNA upstream 620646 37291015 ~ 37291816 (-) True XLOC_022559
TCONS_00044466 mRNA downstream 68314 36497518 ~ 36592436 (-) True XLOC_022542
TCONS_00044465 mRNA downstream 211639 36443022 ~ 36449111 (-) True XLOC_022541
TCONS_00044464 mRNA downstream 214443 36443022 ~ 36446307 (-) False XLOC_022541
TCONS_00044462 mRNA downstream 219057 36424768 ~ 36441693 (-) False XLOC_022540
TCONS_00044463 mRNA downstream 220789 36425113 ~ 36439961 (-) True XLOC_022540
TCONS_00044469 mRNA upstream 4838 36675207 ~ 36724575 (-) True XLOC_022546
TCONS_00044470 mRNA upstream 40655 36711024 ~ 36753195 (-) False XLOC_022547
TCONS_00044472 mRNA upstream 146117 36816486 ~ 36857964 (-) False XLOC_022549
TCONS_00044473 mRNA upstream 146117 36816486 ~ 36857966 (-) False XLOC_022549
TCONS_00044474 mRNA upstream 152004 36822373 ~ 36823932 (-) False XLOC_022549
TCONS_00044467 other downstream 150631 36509997 ~ 36510119 (-) True XLOC_022543
TCONS_00044460 other downstream 242728 36413698 ~ 36418022 (-) False XLOC_022539
TCONS_00044457 other downstream 338626 36322010 ~ 36322124 (-) True XLOC_022538
TCONS_00044435 other downstream 661418 35998547 ~ 35999332 (-) True XLOC_022531
TCONS_00044432 other downstream 795897 35864726 ~ 35864853 (-) True XLOC_022530
TCONS_00044471 other upstream 48006 36718375 ~ 36718495 (-) True XLOC_022548
TCONS_00044475 other upstream 158103 36828472 ~ 36828588 (-) True XLOC_022550
TCONS_00044482 other upstream 289422 36959791 ~ 36959912 (-) True XLOC_022554
TCONS_00044489 other upstream 606704 37277073 ~ 37280713 (-) True XLOC_022558
TCONS_00044499 other upstream 1426451 38096820 ~ 38099972 (-) True XLOC_022568

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_01955349_01972242.mRNA True 4326 mRNA 0.50 11 CI01000001 1955349 ~ 1973010 (+)
bowfin (Amia calva) AMCG00008832 True 3341 mRNA 0.56 4 CM030126.1 12913536 ~ 12917796 (-)