RNA id: TCONS_00045082


Basic Information

Item Value
RNA id TCONS_00045082
length 573
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id XLOC_022547
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 36711024 ~ 36754685 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGTCATATAGGGCAGGTGTATCAGTCATATTGGACAGGGCTTtcagtgttttagggtggggGTATCAGTAATATAGGGTGAGACTCTCAGTgcttaaggcggggctatcagtcatataGGGCGGGGTTATTTGTGTTTTAGCGGgaggctatcagtgttttagggcaaGGCTATAAATCTTATttggcggggctatcagtcatataGGGCAGGGATAATTgtgttttagggtggggctatttgTGTTTTAGGGTGAGGCTTTCAgtgttttagggcagggctatcagtcatataGGGTGGGGATAATTGTGTTTTAGGGTGACGCTATCAGTCCTataaggtggggctatcagtgtttAAGGGTAGAGCAATCAGTCATAATGGGCGGGGCTGTGAGTCATGTAGGACGGGGATAATTGtgttttagggtggggttatttGTGTTTAGGGTGAGGCTATCAGTCctatagggcggggctatcagtgttttagggcgggCTATGAGTCATAGGGGGAGGCTATAAATGgtttaaggtggggctatcagtgttttagggcaaGGCTATTATTCa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045080 lncRNA downstream 144919 36605744 ~ 36608783 (-) True XLOC_022544
TCONS_00045079 lncRNA downstream 145379 36605744 ~ 36608323 (-) False XLOC_022544
TCONS_00045078 lncRNA downstream 146942 36605744 ~ 36606760 (-) False XLOC_022544
TCONS_00044746 lncRNA downstream 333545 36418152 ~ 36420157 (-) False XLOC_022539
TCONS_00045083 lncRNA upstream 113771 36868045 ~ 36869244 (-) True XLOC_022551
TCONS_00044748 lncRNA upstream 242930 36997204 ~ 37000484 (-) True XLOC_022555
TCONS_00044492 lncRNA upstream 536741 37291015 ~ 37291816 (-) True XLOC_022559
TCONS_00044749 lncRNA upstream 769263 37523537 ~ 37525054 (-) True XLOC_022562
TCONS_00045084 lncRNA upstream 967110 37721384 ~ 37724565 (-) False XLOC_022566
TCONS_00044470 mRNA downstream 507 36711024 ~ 36753195 (-) False XLOC_022547
TCONS_00044469 mRNA downstream 29127 36675207 ~ 36724575 (-) True XLOC_022546
TCONS_00044468 mRNA downstream 83333 36660750 ~ 36670369 (-) True XLOC_022545
TCONS_00044466 mRNA downstream 161266 36497518 ~ 36592436 (-) True XLOC_022542
TCONS_00044465 mRNA downstream 304591 36443022 ~ 36449111 (-) True XLOC_022541
TCONS_00044472 mRNA upstream 62212 36816486 ~ 36857964 (-) False XLOC_022549
TCONS_00044473 mRNA upstream 62212 36816486 ~ 36857966 (-) False XLOC_022549
TCONS_00044474 mRNA upstream 68099 36822373 ~ 36823932 (-) False XLOC_022549
TCONS_00044476 mRNA upstream 88121 36842395 ~ 36857964 (-) True XLOC_022549
TCONS_00044477 mRNA upstream 116080 36870354 ~ 36884290 (-) False XLOC_022552
TCONS_00044471 other downstream 35207 36718375 ~ 36718495 (-) True XLOC_022548
TCONS_00044467 other downstream 243583 36509997 ~ 36510119 (-) True XLOC_022543
TCONS_00044460 other downstream 335680 36413698 ~ 36418022 (-) False XLOC_022539
TCONS_00044457 other downstream 431578 36322010 ~ 36322124 (-) True XLOC_022538
TCONS_00044435 other downstream 754370 35998547 ~ 35999332 (-) True XLOC_022531
TCONS_00044475 other upstream 74198 36828472 ~ 36828588 (-) True XLOC_022550
TCONS_00044482 other upstream 205517 36959791 ~ 36959912 (-) True XLOC_022554
TCONS_00044489 other upstream 522799 37277073 ~ 37280713 (-) True XLOC_022558
TCONS_00044499 other upstream 1342546 38096820 ~ 38099972 (-) True XLOC_022568
TCONS_00044500 other upstream 1373178 38127452 ~ 38127569 (-) True XLOC_022569

Expression Profile

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