RNA id: TCONS_00044475


Basic Information

Item Value
RNA id TCONS_00044475
length 117
RNA type rRNA
GC content 0.54
exon number 1
gene id XLOC_022550
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 36828472 ~ 36828588 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCCACAGCCATTTCAcgctgcagcccaagaccggttgctcgctgaagctaagcagggctgaacctggtcagtacctgaatgggagattGCATGGGACAACTAGGTTGcttttggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000177925

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045081 lncRNA downstream 73787 36750938 ~ 36754685 (-) False XLOC_022547
TCONS_00045082 lncRNA downstream 74198 36753702 ~ 36754274 (-) True XLOC_022547
TCONS_00045080 lncRNA downstream 219689 36605744 ~ 36608783 (-) True XLOC_022544
TCONS_00045079 lncRNA downstream 220149 36605744 ~ 36608323 (-) False XLOC_022544
TCONS_00045078 lncRNA downstream 221712 36605744 ~ 36606760 (-) False XLOC_022544
TCONS_00045083 lncRNA upstream 39457 36868045 ~ 36869244 (-) True XLOC_022551
TCONS_00044748 lncRNA upstream 168616 36997204 ~ 37000484 (-) True XLOC_022555
TCONS_00044492 lncRNA upstream 462427 37291015 ~ 37291816 (-) True XLOC_022559
TCONS_00044749 lncRNA upstream 694949 37523537 ~ 37525054 (-) True XLOC_022562
TCONS_00045084 lncRNA upstream 892796 37721384 ~ 37724565 (-) False XLOC_022566
TCONS_00044474 mRNA downstream 4540 36822373 ~ 36823932 (-) False XLOC_022549
TCONS_00044470 mRNA downstream 75277 36711024 ~ 36753195 (-) False XLOC_022547
TCONS_00044469 mRNA downstream 103897 36675207 ~ 36724575 (-) True XLOC_022546
TCONS_00044468 mRNA downstream 158103 36660750 ~ 36670369 (-) True XLOC_022545
TCONS_00044466 mRNA downstream 236036 36497518 ~ 36592436 (-) True XLOC_022542
TCONS_00044476 mRNA upstream 13807 36842395 ~ 36857964 (-) True XLOC_022549
TCONS_00044477 mRNA upstream 41766 36870354 ~ 36884290 (-) False XLOC_022552
TCONS_00044478 mRNA upstream 46181 36874769 ~ 36884012 (-) True XLOC_022552
TCONS_00044479 mRNA upstream 60325 36888913 ~ 36910656 (-) False XLOC_022553
TCONS_00044480 mRNA upstream 60743 36889331 ~ 36934944 (-) False XLOC_022553
TCONS_00044471 other downstream 109977 36718375 ~ 36718495 (-) True XLOC_022548
TCONS_00044467 other downstream 318353 36509997 ~ 36510119 (-) True XLOC_022543
TCONS_00044460 other downstream 410450 36413698 ~ 36418022 (-) False XLOC_022539
TCONS_00044457 other downstream 506348 36322010 ~ 36322124 (-) True XLOC_022538
TCONS_00044435 other downstream 829140 35998547 ~ 35999332 (-) True XLOC_022531
TCONS_00044482 other upstream 131203 36959791 ~ 36959912 (-) True XLOC_022554
TCONS_00044489 other upstream 448485 37277073 ~ 37280713 (-) True XLOC_022558
TCONS_00044499 other upstream 1268232 38096820 ~ 38099972 (-) True XLOC_022568
TCONS_00044500 other upstream 1298864 38127452 ~ 38127569 (-) True XLOC_022569
TCONS_00044502 other upstream 1322827 38151415 ~ 38159744 (-) True XLOC_022570

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU313216 True 4177 lncRNA 0.40 2 CI01000069 4699271 ~ 4703469 (-)
eurasian perch (Perca fluviatilis) TU313216 True 415 lncRNA 0.41 1 NC_053134.1 28351029 ~ 28351443 (+)