RNA id: TCONS_00045083


Basic Information

Item Value
RNA id TCONS_00045083
length 770
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id XLOC_022551
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 36868045 ~ 36869244 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCAAAAGATTGCAAGAGGAAAATAGTCCAATCATTCCTtagagacaaaaacaaacaagaaaagatGCTGATGTTTGTCACATCATTTATTGCTGTGACGATAATCCCAGAGTATTTTATTTCCTGGACTTGGCTCGACTGTAAACGTGCTTTACCGATGGAAAATTTCCTcttaaatgcatttgtgctcgCTTGCGCTACGCCAGCCGTAACAAGCTATTAGGCCAGGAAAGCAGCAGTGTGAAATGAAttatttgtcttttgtttgtctGTGATGCGGCGCTCCAAGTGTACATTAACTTTCTTTCAGAGCAGGTCACTGTTGGTCAGAAGAAAAGCATATGAACTCATTCTTTTTCGTTTTTTCGGCCATGTAACACTATAAATTGTCTTTTCGTGCAATATGTAGGATTGTCAGCAGCACTACTTGGCTTTCACGATACACAGCACTTCTTTTTGTTTCCGAGGGTTGTGATTTATGCaataattctttaataaattgaaaTTCTTATTAAGAACATAGGTGGGCAGATATGCATTCAGTTCTTACGATTCCTGTTGTACTGTAAGATCTCTGGTTGTGTTCGTTAGGACAAGTACTTTGAGCTGCACAATTTATTCACAACAAAGACTTTGAAGTCAAAGTCTAGTTCGCGGAGATCCGAATGCACCCCAAGACATCTCTTTCTGGGTCAGAACGGTTGTGTCGCTGGCTGCTGGTTTTGACTCTGAGTGAATTTTTACTCTCATTGTGCCAGTTTagatcgtca

Function

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0008263 pyrimidine-specific mismatch base pair DNA N-glycosylase activity molecular_function
GO:0000700 mismatch base pair DNA N-glycosylase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045081 lncRNA downstream 113360 36750938 ~ 36754685 (-) False XLOC_022547
TCONS_00045082 lncRNA downstream 113771 36753702 ~ 36754274 (-) True XLOC_022547
TCONS_00045080 lncRNA downstream 259262 36605744 ~ 36608783 (-) True XLOC_022544
TCONS_00045079 lncRNA downstream 259722 36605744 ~ 36608323 (-) False XLOC_022544
TCONS_00045078 lncRNA downstream 261285 36605744 ~ 36606760 (-) False XLOC_022544
TCONS_00044748 lncRNA upstream 127960 36997204 ~ 37000484 (-) True XLOC_022555
TCONS_00044492 lncRNA upstream 421771 37291015 ~ 37291816 (-) True XLOC_022559
TCONS_00044749 lncRNA upstream 654293 37523537 ~ 37525054 (-) True XLOC_022562
TCONS_00045084 lncRNA upstream 852140 37721384 ~ 37724565 (-) False XLOC_022566
TCONS_00045085 lncRNA upstream 853175 37722419 ~ 37724523 (-) False XLOC_022566
TCONS_00044473 mRNA downstream 10079 36816486 ~ 36857966 (-) False XLOC_022549
TCONS_00044472 mRNA downstream 10081 36816486 ~ 36857964 (-) False XLOC_022549
TCONS_00044476 mRNA downstream 10081 36842395 ~ 36857964 (-) True XLOC_022549
TCONS_00044474 mRNA downstream 44113 36822373 ~ 36823932 (-) False XLOC_022549
TCONS_00044470 mRNA downstream 114850 36711024 ~ 36753195 (-) False XLOC_022547
TCONS_00044477 mRNA upstream 1110 36870354 ~ 36884290 (-) False XLOC_022552
TCONS_00044478 mRNA upstream 5525 36874769 ~ 36884012 (-) True XLOC_022552
TCONS_00044479 mRNA upstream 19669 36888913 ~ 36910656 (-) False XLOC_022553
TCONS_00044480 mRNA upstream 20087 36889331 ~ 36934944 (-) False XLOC_022553
TCONS_00044481 mRNA upstream 22436 36891680 ~ 36934944 (-) True XLOC_022553
TCONS_00044475 other downstream 39457 36828472 ~ 36828588 (-) True XLOC_022550
TCONS_00044471 other downstream 149550 36718375 ~ 36718495 (-) True XLOC_022548
TCONS_00044467 other downstream 357926 36509997 ~ 36510119 (-) True XLOC_022543
TCONS_00044460 other downstream 450023 36413698 ~ 36418022 (-) False XLOC_022539
TCONS_00044457 other downstream 545921 36322010 ~ 36322124 (-) True XLOC_022538
TCONS_00044482 other upstream 90547 36959791 ~ 36959912 (-) True XLOC_022554
TCONS_00044489 other upstream 407829 37277073 ~ 37280713 (-) True XLOC_022558
TCONS_00044499 other upstream 1227576 38096820 ~ 38099972 (-) True XLOC_022568
TCONS_00044500 other upstream 1258208 38127452 ~ 38127569 (-) True XLOC_022569
TCONS_00044502 other upstream 1282171 38151415 ~ 38159744 (-) True XLOC_022570

Expression Profile

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