RNA id: TCONS_00044477


Basic Information

Item Value
RNA id TCONS_00044477
length 1099
RNA type mRNA
GC content 0.50
exon number 7
gene id XLOC_022552
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 36870354 ~ 36884290 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCACTTCCTGGTGTTGCGGTGGCCATATTGGCATGGGGGATAGATGACAATTTCACCTTAGCCGAAGAgctacatttttgttatttttgaaagTTTATCCAGGGCGTGTTCACTCGAAAATAAAGGGATATCGATATATCACCAGAACCTGACCCTGGTCGATCCCGTGGAGGGCGTTGAAAGAGATGAGCAACAACTTAAACAAGAGGGCCCCAACCACAGCAACACAGCGGCTAAAACAGGATTACCTGCGCATCAAGAAAGATCCAGTCCCGTATATCTGTGCTGAACCTCTGCCCTCCAACATTTTGGAATGGCATTATCTAGTTCGTGGCCCTGAGAAAACTCCATATGAAGGTGGTTACTATCATGGCAAACTCATTTTTCCACGGGAATTTCCCTTCAAGCCGCCGAGCATATACATGATCACACCCAACGGCAGATTTAAATGCAACACGAGGTTGTGTCTTTCCATCACAGATTTTCACCCTGACACGTGGAACCCTGCGTGGTCTGTGTCCACCATTTTAACCGGCCTCCTGAGCTTCATGGTGGAAAAAGGCCCGACTCTTGGCAGTATCGAAACTTCTGACTTCACAAAACGACAGCTGGCCTCCCAGAGTCTTGCATTCAACATCAAGGACAAAGTTTTTTGCGAACTCTTTCCAGATGTTGTTGAAGAAATCAAGCAGAAGCAGCGTATGCAGGAGGAGCTCAGGTCACGCTCGCAGGCGCTGCCGCTTCCCGACGTGGTTCCGGACGGTGAAGCCCATCATGCACAAAACGGCCACCTGCCCCTGAACGGGCACCTGCCGCCTGGCGCAAACCATCCCGCTGACCTCCAGCAGGTCAACCGAAACCATGGACTCCTGGGTGGAGCGCTTGCTAATTTGTTCGTCATCGTAGGCTTCGCTGCATTCGCCTACACGGTCAAGTACGTTCTGCGGAGCATCGCTCAGGAATGATCCGGCCAATGAGAGAGACCGACCGACGGGCGGGACAACAGGCTGGTGCTGTTCTCACGACCAAAATAGGTAGCGAGAAATCAAAAAAGGGGTTTTCTCACAACCAAATAAAAATGAAGCAGTGTCCCATTAA

Function

GO:

id name namespace
GO:0030433 ubiquitin-dependent ERAD pathway biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0061631 ubiquitin conjugating enzyme activity molecular_function

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum
ko04120 Ubiquitin mediated proteolysis
ko05012 Parkinson disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-070410-28 Predicted to enable ubiquitin conjugating enzyme activity. Predicted to be involved in protein polyubiquitination and ubiquitin-dependent ERAD pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum and nucleus. Orthologous to human UBE2J2 (ubiquitin conjugating enzyme E2 J2).

Ensembl:

ensembl_id ENSDART00000086924

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045083 lncRNA downstream 1110 36868045 ~ 36869244 (-) True XLOC_022551
TCONS_00045081 lncRNA downstream 115669 36750938 ~ 36754685 (-) False XLOC_022547
TCONS_00045082 lncRNA downstream 116080 36753702 ~ 36754274 (-) True XLOC_022547
TCONS_00045080 lncRNA downstream 261571 36605744 ~ 36608783 (-) True XLOC_022544
TCONS_00045079 lncRNA downstream 262031 36605744 ~ 36608323 (-) False XLOC_022544
TCONS_00044748 lncRNA upstream 112914 36997204 ~ 37000484 (-) True XLOC_022555
TCONS_00044492 lncRNA upstream 406725 37291015 ~ 37291816 (-) True XLOC_022559
TCONS_00044749 lncRNA upstream 639247 37523537 ~ 37525054 (-) True XLOC_022562
TCONS_00045084 lncRNA upstream 837094 37721384 ~ 37724565 (-) False XLOC_022566
TCONS_00045085 lncRNA upstream 838129 37722419 ~ 37724523 (-) False XLOC_022566
TCONS_00044473 mRNA downstream 12388 36816486 ~ 36857966 (-) False XLOC_022549
TCONS_00044472 mRNA downstream 12390 36816486 ~ 36857964 (-) False XLOC_022549
TCONS_00044476 mRNA downstream 12390 36842395 ~ 36857964 (-) True XLOC_022549
TCONS_00044474 mRNA downstream 46422 36822373 ~ 36823932 (-) False XLOC_022549
TCONS_00044470 mRNA downstream 117159 36711024 ~ 36753195 (-) False XLOC_022547
TCONS_00044479 mRNA upstream 4623 36888913 ~ 36910656 (-) False XLOC_022553
TCONS_00044480 mRNA upstream 5041 36889331 ~ 36934944 (-) False XLOC_022553
TCONS_00044481 mRNA upstream 7390 36891680 ~ 36934944 (-) True XLOC_022553
TCONS_00044483 mRNA upstream 173313 37057603 ~ 37085968 (-) False XLOC_022556
TCONS_00044484 mRNA upstream 183781 37068071 ~ 37085959 (-) False XLOC_022556
TCONS_00044475 other downstream 41766 36828472 ~ 36828588 (-) True XLOC_022550
TCONS_00044471 other downstream 151859 36718375 ~ 36718495 (-) True XLOC_022548
TCONS_00044467 other downstream 360235 36509997 ~ 36510119 (-) True XLOC_022543
TCONS_00044460 other downstream 452332 36413698 ~ 36418022 (-) False XLOC_022539
TCONS_00044457 other downstream 548230 36322010 ~ 36322124 (-) True XLOC_022538
TCONS_00044482 other upstream 75501 36959791 ~ 36959912 (-) True XLOC_022554
TCONS_00044489 other upstream 392783 37277073 ~ 37280713 (-) True XLOC_022558
TCONS_00044499 other upstream 1212530 38096820 ~ 38099972 (-) True XLOC_022568
TCONS_00044500 other upstream 1243162 38127452 ~ 38127569 (-) True XLOC_022569
TCONS_00044502 other upstream 1267125 38151415 ~ 38159744 (-) True XLOC_022570

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_01868471_01873459.mRNA True 840 mRNA 0.52 6 CI01000001 1868471 ~ 1873519 (+)