RNA id: TCONS_00044480


Basic Information

Item Value
RNA id TCONS_00044480
length 2302
RNA type mRNA
GC content 0.50
exon number 17
gene id XLOC_022553
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 36888913 ~ 36934944 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCATAAGTATGCATTCAGCCATAAAGTATGAGGAAGCatgtatgtattatgtatttttttgcattttatactattatctgttttgttattttattttttgaacagtTTCAAGTTTCTATTTCTTGATGGCCATttgtatacatacattttttatcgCATATACTCAGAAGCGTGATGTGTTTCAGTTTCCCTTATCTTGTCATTCAAAGCATCATCGATCGTCGATGTAATGCAGAACAAAATTACGTTACATTGACACATAAAAAACATGCAGCAGGTCAGTGTTTAGCGTGTGGGTCGTCAGCTGTATGCTAATGTGCTTTAGCTCAGGCAGTGGGCAGCAGGTGGAGCTACTCATGATGACTGAGttcaacacactcacacatacagacacacattcTGCACGGACTGCACACACGTTCACTTCAGCTCAGACGCTTTATTGGACCCAATGATTctaaaatgcatcaaatatttAAGGAGGAAGATATTCAGCAGGTTGGACTTGACTTTGGACTTTGCGTATGATGATCCAAAGTTGGAGTACAATGTGGATGCGCCGAATGGGCTGGTGATGGAGGGTTACCTGTTTAAAAGGGCCAGTAATGCCTTCAAAACGTGGAATAGGCGGTGGTTCTCCATTCAAAACAGCCAGTTAGTTTATCAGAAGAAACTAAAGGACTCTCTGACTGTCGTTGTGGAGGATTTAAGACTGTGTTCCGTCAAACCATGTGAAGACATCGAGAGGAGATTCTGTTTTGAAGTCGTGTCGCCCACCAAGAGCTGTATGCTGCAGGCAGAGTCTGAGAAACTCCGGCAGGCCTGGATTCAAGCTGTTCAAGCCAGTATTGCCTCAGCATACAGAGAGAGTCCAGACAACTACTATATTGAGCGCCTGGACCGGACGGCGTCTCCCTCCATCAGCAGTATAGACTCAGCGAGTGAATCGCGCGAGCGCAGCGTCAGAGGAGAGAATATCCTGCAGAGGATCCTCAGTCTGCCGGGGAATCAGCAGTGCTGTGACTGTGCTCAGACGGAGCCACGCTGGGCCAGCATTAACCTGGGCGTCCTGCTCTGCATCGAGTGCTCCGGCATTCACAGGAGTTTGGGAGTTCACTGTTCAAAAGTGCGTTCTCTCACTCTGGACTCATGGGAACCGGAGTTACTGAAGCTGATGTGTGAATTGGGGAACAGTATTATCAACCACATCTATGAAGGCAGCTGTGAAGAGCAGGGCCTGAAGAAACCAGCACCCAACAGCTCCAGGCAAGAAAAGGAGGCCTGGATTAAGGCGAAGTATGTGGAGAAGAAGTTTCTGAAGAAGATGATGACGGGTGAGGTTGTGGTGAACGGCGGGAGGAAATCTGAGCGGCGCTGGAACTCCAGAAAGTGCAGGAGGCACAACAGTGCCACAACCGTCCCCAAAACACACCGCAAATACAGGCAGGATCCAGGCAGTGCATCTCCAGCAACCCTGTCCTCAGCAACTGCTGCTCTGGAGAGAAAGTTCAGACGGGAATCGCTCTTCTGCCCGGATGAGTTAGACAACCTCTTTTCCTATTTCGACACTGGTTCAGGGCCTCGCAGTCCTACAGGTCTGAGCAGTGACAGTGGGTTAGGAGGCAGCACTGACGGCAGCACTGACGTCTTGGTGTTCGAGTCTGTGGTGGACAGCGTCACAGAGGAGGAGTGTGAGGTGTCTGAGGACTCTAGTAATGAGGCTGAACTGGAGCCAGAAGCATCAGATCCTGAGGACTCGAGAGAGCTGGATGCTGGAGCGTTACTCTACAAGGCCTGTCAGGCACGCAATTTGCCTGTTATGGCCGAAGCTCTGGCACACGGAGCCGACGTCAACTCTGTCAATGAAGAGGACGAGGGGAAAAGCCCGCTCATTCAGGCTGTGATTGGGgGTTCTTTAATAGCCTGCGAGTTTCTGCTGCAAAATAGTGCTGATGTGAACCAGAGAGATCACAGGGGAAGAGGCCCGCTGCATCACGCCACTTATTTAGGACACACTGGgCAAGTGTGCTTGTTTCTGAAACGAGGAGCAACTCAAAACGACGGGGATGAGGATGGACAGGACCCGCTGAGCATAGCGGTTCAAGCGGCTAACGCTGATATCGTTACTCTGTTACGTCTGGCACGGATGAATGAGGAGATGCGCGAGTCGGAGGGCCCGTTCGGCCAGCCAGGTGACACCACATACCTGGATATTTTCCGAGAGTTTTCCCACATGGCATCCCACAATCCGGAGAAGCTGAAGCGGAGAAGTGTTCACTTCCGTCACTCCTTCAGAGTGTGA

Function

GO:

id name namespace
GO:0005096 GTPase activator activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1711 Predicted to enable GTPase activator activity and metal ion binding activity. Orthologous to human ACAP3 (ArfGAP with coiled-coil, ankyrin repeat and PH domains 3).

Ensembl:

ensembl_id ENSDART00000109976

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045083 lncRNA downstream 20087 36868045 ~ 36869244 (-) True XLOC_022551
TCONS_00045081 lncRNA downstream 134646 36750938 ~ 36754685 (-) False XLOC_022547
TCONS_00045082 lncRNA downstream 135057 36753702 ~ 36754274 (-) True XLOC_022547
TCONS_00045080 lncRNA downstream 280548 36605744 ~ 36608783 (-) True XLOC_022544
TCONS_00045079 lncRNA downstream 281008 36605744 ~ 36608323 (-) False XLOC_022544
TCONS_00044748 lncRNA upstream 62260 36997204 ~ 37000484 (-) True XLOC_022555
TCONS_00044492 lncRNA upstream 356071 37291015 ~ 37291816 (-) True XLOC_022559
TCONS_00044749 lncRNA upstream 588593 37523537 ~ 37525054 (-) True XLOC_022562
TCONS_00045084 lncRNA upstream 786440 37721384 ~ 37724565 (-) False XLOC_022566
TCONS_00045085 lncRNA upstream 787475 37722419 ~ 37724523 (-) False XLOC_022566
TCONS_00044477 mRNA downstream 5041 36870354 ~ 36884290 (-) False XLOC_022552
TCONS_00044478 mRNA downstream 5319 36874769 ~ 36884012 (-) True XLOC_022552
TCONS_00044473 mRNA downstream 31365 36816486 ~ 36857966 (-) False XLOC_022549
TCONS_00044472 mRNA downstream 31367 36816486 ~ 36857964 (-) False XLOC_022549
TCONS_00044483 mRNA upstream 122659 37057603 ~ 37085968 (-) False XLOC_022556
TCONS_00044484 mRNA upstream 133127 37068071 ~ 37085959 (-) False XLOC_022556
TCONS_00044485 mRNA upstream 141508 37076452 ~ 37085547 (-) True XLOC_022556
TCONS_00044486 mRNA upstream 160848 37095792 ~ 37113430 (-) False XLOC_022557
TCONS_00044487 mRNA upstream 161271 37096215 ~ 37113396 (-) False XLOC_022557
TCONS_00044475 other downstream 60743 36828472 ~ 36828588 (-) True XLOC_022550
TCONS_00044471 other downstream 170836 36718375 ~ 36718495 (-) True XLOC_022548
TCONS_00044467 other downstream 379212 36509997 ~ 36510119 (-) True XLOC_022543
TCONS_00044460 other downstream 471309 36413698 ~ 36418022 (-) False XLOC_022539
TCONS_00044457 other downstream 567207 36322010 ~ 36322124 (-) True XLOC_022538
TCONS_00044482 other upstream 24847 36959791 ~ 36959912 (-) True XLOC_022554
TCONS_00044489 other upstream 342129 37277073 ~ 37280713 (-) True XLOC_022558
TCONS_00044499 other upstream 1161876 38096820 ~ 38099972 (-) True XLOC_022568
TCONS_00044500 other upstream 1192508 38127452 ~ 38127569 (-) True XLOC_022569
TCONS_00044502 other upstream 1216471 38151415 ~ 38159744 (-) True XLOC_022570

Expression Profile

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