RNA id: TCONS_00044748


Basic Information

Item Value
RNA id TCONS_00044748
length 1013
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id XLOC_022555
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 36997204 ~ 37000484 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atttttggtaacactttacaccatttactactggccAATTACCTCcttgttattaagatattaactgctTATTAGCaatttaaaagtgtttatttttcatccctaatcctacccagtacctaaacccaactgcaatcttacttactattaataagcagctaattagtagtgtGTATTGAGCTAAAAATCATAGCTAATAGTTTGTTGATAGCGTGAGTTAAAATAAAGTATGATCTCATTTTAACTGTTTCATTTTAAGTTGAAGTAACACTCCATGCCTGTTTTTGACCGTTAAACCGTAAATATCCTCCATTAATCGCCAGCAGGGGCATATGAAGGTGAATGAGACTCTCTAATTCATGCTAATCAGACGTAACTCATGAGGTAGTGGCGATGATGTCATTAGTCTTTTGTGCTCAGCCTGTGTGAAGTCCGCCGGTTCTTCCTGTCCACAAAAGCTGAATAGCcgctccattcacacacacaaaaaagctgGGCATTCTGAGCCGTTTGTAAAGCACTTCTAAGCAACATCCTGGAAGTGTGAAGACTGTAAGAGAGTGCAAAGGGTTTATTAAGTGAAAGGGAATCGAATAACCCGGCCGTATGACTCAGTTTGCTTCCTTTGAGATGTTTGGGTCCTGTTTGGCTACTGATGCGATTCTGCTGTTAAGAGTTTCCCATGAAGCCCCCCTGTTGACAGATGCAGCGGTCTTTCTCCACAGGAAGAACAACATGAAGCGCTTCATTCAATGCTGAGGCGTTTCCTTCCAATCCTTCAGATATTCAGCATTTCTCAAAGCACTTGTAAACAGCCTCCGATCCCTCCAAACACAGTCAAAAGCCTGCTAGCGTGACGGAGCAGGTGGATGTAATGGTACTCAATTAGGATTATGGTCCCCGACCCACTGCCAGCTCTGCTTCTACTGACCCGCACAGCGTTCACAAGTTCACAGCGGGAGGCCAGCGTCTCAGCAGGGGGCTCGTCATTCTGCTAATCTCTTATGATTCAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045083 lncRNA downstream 127960 36868045 ~ 36869244 (-) True XLOC_022551
TCONS_00045081 lncRNA downstream 242519 36750938 ~ 36754685 (-) False XLOC_022547
TCONS_00045082 lncRNA downstream 242930 36753702 ~ 36754274 (-) True XLOC_022547
TCONS_00045080 lncRNA downstream 388421 36605744 ~ 36608783 (-) True XLOC_022544
TCONS_00045079 lncRNA downstream 388881 36605744 ~ 36608323 (-) False XLOC_022544
TCONS_00044492 lncRNA upstream 290531 37291015 ~ 37291816 (-) True XLOC_022559
TCONS_00044749 lncRNA upstream 523053 37523537 ~ 37525054 (-) True XLOC_022562
TCONS_00045084 lncRNA upstream 720900 37721384 ~ 37724565 (-) False XLOC_022566
TCONS_00045085 lncRNA upstream 721935 37722419 ~ 37724523 (-) False XLOC_022566
TCONS_00045086 lncRNA upstream 721935 37722419 ~ 37724556 (-) False XLOC_022566
TCONS_00044480 mRNA downstream 62260 36889331 ~ 36934944 (-) False XLOC_022553
TCONS_00044481 mRNA downstream 62260 36891680 ~ 36934944 (-) True XLOC_022553
TCONS_00044479 mRNA downstream 86548 36888913 ~ 36910656 (-) False XLOC_022553
TCONS_00044477 mRNA downstream 112914 36870354 ~ 36884290 (-) False XLOC_022552
TCONS_00044478 mRNA downstream 113192 36874769 ~ 36884012 (-) True XLOC_022552
TCONS_00044483 mRNA upstream 57119 37057603 ~ 37085968 (-) False XLOC_022556
TCONS_00044484 mRNA upstream 67587 37068071 ~ 37085959 (-) False XLOC_022556
TCONS_00044485 mRNA upstream 75968 37076452 ~ 37085547 (-) True XLOC_022556
TCONS_00044486 mRNA upstream 95308 37095792 ~ 37113430 (-) False XLOC_022557
TCONS_00044487 mRNA upstream 95731 37096215 ~ 37113396 (-) False XLOC_022557
TCONS_00044482 other downstream 37292 36959791 ~ 36959912 (-) True XLOC_022554
TCONS_00044475 other downstream 168616 36828472 ~ 36828588 (-) True XLOC_022550
TCONS_00044471 other downstream 278709 36718375 ~ 36718495 (-) True XLOC_022548
TCONS_00044467 other downstream 487085 36509997 ~ 36510119 (-) True XLOC_022543
TCONS_00044460 other downstream 579182 36413698 ~ 36418022 (-) False XLOC_022539
TCONS_00044489 other upstream 276589 37277073 ~ 37280713 (-) True XLOC_022558
TCONS_00044499 other upstream 1096336 38096820 ~ 38099972 (-) True XLOC_022568
TCONS_00044500 other upstream 1126968 38127452 ~ 38127569 (-) True XLOC_022569
TCONS_00044502 other upstream 1150931 38151415 ~ 38159744 (-) True XLOC_022570
TCONS_00044508 other upstream 2641480 39641964 ~ 39666458 (-) True XLOC_022580

Expression Profile

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