RNA id: TCONS_00044483


Basic Information

Item Value
RNA id TCONS_00044483
length 7259
RNA type mRNA
GC content 0.40
exon number 17
gene id XLOC_022556
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 37057603 ~ 37085968 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAAGTCCTATTCACATTAGCGCTGTGTTGGAGTTGACATATCTGAAGGTTGTTAAACATATTGGAGATATTTATAAGTTGAAAACTGATATTGTTTAAATTTAGTAACTCCGTAGATGATTTACTGATGGAAACGAATGAAAATGCGCCTATGAATAAAGTATATGaataaagtaatatttattaCGCTTTGTCCAGTAATCACAAACGAATATAATTAGTCCATGCTACCAGCGCTGCGAAAAGTAACAGTATACACGtgacattaaattttttttcctcGCTTTATTAGCGGCAGTGattataatttaagcctaaataATAAGCTTTAATCGTTTTAATAAccggtaaataaaaaaattatagtaaaGCTTAAACAGGAAAATTATTATTTAGAACGACAGAAAACGCGTATACCATTAAGCCACGCCCACATGTAGAGTTATGGCTGTGGCGCTGTTTAGCTTTTTGCTAACCTGTGTGTTATTATCTAGTATTTGAACAAATCTACCGTTTTTCAAAGTCATAATATATATTAAGAGAGTGAGCTATAGTACATAAGATGACTGACATGCACACATGAAGTGTGGAATTTATGTCCAGCTAACGTTAATCTAACGTTACAGATTGCCTGTCGGTCTTCTGTaaacagaataaaacatttatttcggATCTTTGCTAAGCTGCCAAGATGCCTGATATCAAAGTTACGCCTTTAGGGGCTGGTCAGGATGTCGGCCGCAGCTGTATTCTGGTCTCCATCGGAGGCAAAAACATCATGCTGGACTGCGGGATGCACATGGGCTTTAATGATGACAGACGTTTCCCAGATTTTAGTTACATTACTCAAAATGGCCGCCTCACCGAGTTCTTGGACTGTGTCATTATAAGTCATTTCCATCTGGACCACTGCGGTGCTCTTCCTTACATGAGCGAGATGGTGGGTTACGACGGGCCCATCTACATGACCCACCCCACCAAAGCCATCTGCCCCATCCTGCTGGAGGACTTCAGGAAGATCACGGTGGACAAAAAGGGAGAGACCAACTTCTTCACCTCACAGATGATCAAAGACTGCATGAAGAAAGTGGTGCCTCTCAACCTCCATCAAACTGTGCAGGTTGACGATGAGCTTGAGATCAAAGCATACTACGCAGGTCATGTTCTTGGAGCCGCCATGGTCCAAATCAAAGTCGGTTCAGAGTCTGTCGTCTATACAGGTGATTACAACATGACCCCAGACAGACATTTAGGAGCTGCTTGGATTGACAAATGTCGGCCAGACATTTTAATATCAGAATCCACATACGCCACCACCATCAGAGACTCCAAACGCTGCAGAGAGAGAGATTTCCTGAAGAAGGTTCATGAAACAGTGGAAAGAGGAGGCAAAGTCTTGATTCCAGTATTTGCTCTAGGAAGAGCACAGGAACTCTGTATTCTGTTGGAAACTTTCTGGGAGCGAATGAATCTGAAAGCCCCCATTTATTTCTCCACCGGGCTGACGGAGAAGGCCAATCACTACTACAAACTGTTCATCACCTGGACCAATCAGAAGATCCGAAAGACCTTCGTACAAAGAAACATGTTTGAGTTCAAGCACATCAAAGCCTTTGATCGCTCGTATGCTGATAACCCTGGTCCAATGGTTGTGTTCGCCACTCCCGGAATGTTGCATGCTGGGCAATCTTTACAGATTTTCAAGAAATGGGCCGGCAATGAAAAGAACATGGTCATCATGCCAGGGTACTGCGTTCAAGGCACCGTTGGACACAAGATCCTGAATGGACAGAAGAAACTGGAGATGGAAGGAAGAGCAACGttGGATGTAAAGCTGCAGGTGGAGTACATGTCCTTCAGCGCTCACGCAGACGCCAAAGGCATCATGCAGTTGATCCGCATGGCAGAACCCAGAAACATGCTGCTGGTGCACGGAGAGGCCAAGAAGATGGAGTTCCTCAAGGACAAGATCGAACAGGAGTTCAGTATCAGCTGTTTTATGCCAGCTAACGGAGAGACCACAACGATCGTGACGAACCCCAGCGTCCCTGTGGACATTTCACTCAATCTGCTGAAGCGAGAGATGGCTCTCGGAGGTCCATTGCCTGATGCTAAAAAACCTCGCACTATGCACGGGACATTAATAATGAAGGACAATagtcTGCGGCTGGTTTCTCCAGAACAGGCTCTTAAAGAGCTGGGTCTCAATGAACATCAGCTGCGATTCACCTGCCGTGTGCAGCTCCACGACCCTCACAGCGACACCGACACACTCAGCCGCATTTACACACATCTCAAAAGTGTATTAAAGAGTTACAGCATCCAGCACGTCCCAGACGGCACCGTCATCGTGGAATCCATCGTCATTAAAGTCACGTCTTCAGCAGAGGAGCCAAATCTCAAAGTCATCCTGCTCTCCTGGAGCTATCAGGATGAGGAATTGGGCAGTTTCTTGTCTACATTGTTGAAGAAAGGTCTGCCTTCTTGACTGCTGAAGCTCAACTGATGTTTTtctttagttaaaaataaataaagatttttttttttataaaatgaatcAAGAAGTCTGTCATttgtgaaaatatatttatttcttagaTCTTAATATCTGTATAAAAGGATTGACATGAAATGagatgcattcacacacatgcacatgcacacacaacccAAAACTTGCATAAACTTGACTCAATATAACTCCGCATATAATCTTTCTGTGTCTTATTTAAAATAGCAGTCATTCTCAATTGTTTTTGCTctttactgtgggggaaaacctGACTTAAAATTACAAGAACTAAGAATGAAGTCTTTATTAATGTGGGAATCCCCAACTCATAGTTACAAGAGGTTCAATAGGTTTTCATATTTCGGTTTTGTACTGTATTAGCACAATACTATGAGGAGAAAGCCTGACAAAATGTTCCTTTAAGATACagtctattttttatatttctttgtaGTTGTACAATTAAATATGCAGCCTGCCCCAGAGTTACCAGAAATCAAATTACTTTTCAAATGTCTCTACTGTTGTTCAATTATGTATTGACAAAAACTGACGGACgatttttaaaagtgttattgGAGTTATACATCATTTTGTATTGTGTATATTTGCACTGTAGCCCAGAGTCACGTATGTCAGAATggactttataaaataaaatagttttatttggtttgttttgcACTGCATTAGCAcagttatttataaaaaaaaaaaaaaaaaattgacttaaAGTTACATAACGTCAAACTGGAGTTCATAGTTCTATGTTGTATATGTTTGCAATGCAGCACAGTTGTGAGTAAAAAATGACCCACTGTTTGTCAAACTGGAGTCATTATCGTCAACACAATCTAACAACAATTTCTACTATTTTTAGCTAATTAGTTGCTCGTTTGTATTATTTAATCATACTTTTTAGTAAAAATGACTCATCccctaatgatggttgggtttaggggtgggccTCCTTCTAAAAACTATCATTTTTTTTCATACGAATTGAATTGTATGtattcatacactctcagaaataaaggtgcaggAGCTGTCACTTggacagtaccttttcaaaaaattCATATTCGTACccagagtccacagtggtacctcaaaggtgtatattagtacccaaatgtatctaaaaagtacttttgaggtaccattatggaccctttaggtCCAAATATGTACCATTTGCAAAGggactgccccagtgacagctcctgcacctttatttctgagagtgtatgaataCATACAATTTCATTCAAAcctcatccctaaacccaaccatcattggggattGAGTCATTTTTACTAAAAcgtatgaataaataatacaaatgagcAACTAATTAGCTAAAAATAGTAGAAATTGCTGCTAGATTGTGTTGACGATAATGACTCCAGTTTGACTTTTTAGgaccttttttttctgagagtgtacgaATTATCTACTCTTCTGGACATCTTTGCACTGGAGTAATACAATCatttaagaacaaaaaaaaaactcaataagtCAAGTCTACAGTTCTGTCTTGTATATTGCTGCACTGTATTAGGACATTTATGTAAGGGGAAAAAATTACTCAAGTCAAATCATCACATATGGCTTTATGTTGTATATTTTTCACTTTAGTTGCACACTTATGAATTAAAAATTATGGATTGACACCGTAGTGGTTGAACTAGATCTTGCAGTCCAATTTCAAAACATTTGAGAGGGTTTTTATTTACCGGCTTCTCCTCCAACGATGACTCTACGTAAACCCAGGTTGCCAGTTTGACAACCCCAACAGGAGCGAGCCGGGCGATCAAACCTTGCTGTAAGCTATTTagctaatgtttacgtttgtaatatttatattgtttgcgAATTCAAAAACACTGTGGAATTTTCTAACTCTAAATCtatgtctcatttcagaggctacTACAGTATTCCAAAGGTCGCATTTCAGCCGCTCCCACATACATTGAGGCAGCCttcaaaactgaaatgaaatgtgctGTATTTTCCGCCAATGCAACCAGGGGtgttgaaatataattgggtaagcTGGCAGAGGGCGGAGTTACACCaatcaaaacaaagatttttcaacacagaacgctcatttttaataagaataatttcttatatttattttacgCTTTCCTGGACACTCAAAGTAGTGAAGAGCTGGAGGGGGCGAGGCGACAGTGCAGGAACTAAAGAGCGGGGAGCAGGTGTGGAGATGGTTGCACATGGGGACAGTACCAAATAGCTGGctggactgtaccaaaaagctaagGGGGGTGGAATTCTGGGAGTTTTCCTAATGACAGAACAATACAGaagattggtctgaaatacagAAGACTCCCTTGAAAAacagaagtgttggcaggtatgccctACTCTTTTCCGAAGGacgtcctgggatttttaacgaccacagaaagTTAAGACCTCAATTAAATGTCTCATCCATAAGACGGCACTCActaaacagtatagagtccccttcactatactggggcgttaggacacACACAGTCCGCGGGTTGAGCGCCCCCCTGcttgcctcactaacaccactttcggcagcaaccaagctttcccatgtttcccatccaggtactgacctcgcttcagtgggcaaccatgtaagagttgcatagagctagctgccggctagaaTTTTTaaaggagaataactgactttagcattgttattCGGATAAACATGTatgttaacacatttttaaaacatctgcACACATGTTAACGTCTTTTTTTATGCTTGAGAAGAGTCCAaaacttacagcacctttaatcaAACTTGCAGCGAGTCAAACTAGAGTCCACATTTCTGTTTTGCAGTTGCCATTGCAGATGgacatgttatttttatttatttgtttagatgCCCACTTGTCTTACATGGCACAGAGCTCTCTAATTGGAAATTGATTTCCCTCAAAATCCATTGGAAATGGAATAAACCCCCTTTTTCTTCTTCAGCCTCAGCCTTTTGAGCCTCCACTTGTAGTGGCCAGTGGCAAAATAGTACAATATCGGGTCCAAGAGGCTGTTCAGACTGACCAGAGCCATGGTCACCCTACGCAGAAAGTAAATCCAGTCGTCTTCTTGGTTTTCACTCAAGCGTGACAGAAGGTGCACTAGATGGACCACATGGTAAGGCAGGAAACACAGAATGGTGATGGCCAGGATGGCATAAATGATCCTTCGAGCTCCACGGGCGGTCGAATTCTTGATTTGGCTGATTCGATGGGCCACGAGTGGGTAACAAACCAAAATGACCACAGAAGGAAGAAGGGATCCAAAGATGAGGCTGCATACACTGTAGGGCGCCAAATCACTCCATTCTTTTGACGTGAATCCCTCAAAGCACATTTTCTCTTTGGTTGACAACGGGCATGTTAGCATGAAGGCCAACATGGCCGACCCAGAGACCAGCCAAACTGCTCCACTCACCAGCGCAGTGAGCCAAGTGTTGCGAAGTCGAAGGTAAGTGTGAGGGTGGAGGGTGGCGATGTATCTGTCAACACAGATGCAGGTCATGAAGGTGATGCTAATGTACATGTTGGCGAAGAATATGGTGCCGGTGATGCGACACATGGCATCGCCGAATATCCAGTTGCTGTCGTTGAGGTGGTAGTGAATGCGGAAGGGCAGGGCGAACAGGAAAAGCGTGTCAGCCACCGCTAGGTTAATGATGTATATGTTCGAAGGCGATTTCTGCTGGATTTTGAAGATGAAGTAATACAGCGCTCCCAGATTTCCGATCAATCCCAAAACCAGCACCAGGATGTAGACGGGTGGGAAGAGGTAGCGCTGGAAGAGCAGGAATTTCACATCGCTGTGGACGGAGGTGGCGTTTTCCATCATGTTGAGTTGCTTTTGTTCATAAAGAGGTTTCGAGATTCAGCTCTCAAGACTTGCTAGAACGGCAGTGAATGCATTATTGTATTGTTCCTTGTTTTGGGTGATAGACTGGTTTTCAGTTCCCTATCAGTATAGAGGTGATTTTTCTGTTAGAAAATAGtgggaaaaaaacacattaatgACATTTGATGTTTATTTAAAGGTGTGAAGATCTTGTTCTGTTGAAGCATGCTGGAAAACATGGTTTAGAAAAAGATAAATACCAGATAAACCATAACCATCTGTTGCATAAGATTTATTACTAAACAGGACGTTCTACCAGAAACGGACATTTTCACTTATGAAAATGTAACAGGGCCTGACCTTTAAACTTGTTTTCCTCAGAAAAAGTATACAAAAATAACCAttaaatcatacaattcaatgataaaCGCATCCTTGATCAGTCAGCTTATCCTCCATCAAATGTTAATTCATCtgagtcatagccttaaaggtgTAATGCACGCATtttattatgaaattatattaaatttaatgcaaacgTGACAGGACTGACAAACATCGGGGCTACTGTAAAACAGTATTTATTtgtgaaatttatttataatttcatgtttttaatcaatcgGATGTGAATGATAACTGAAATTTgctatttctgaaaaaaaaaacatttttaacagtttttagcataacaaaactataaAAACTGTAGGTTCAGTAGGGCTAATGACAAGGACAATGGCAAAGTTTGTacatttgtgaaatgtttttaataaacaaaagaaaaaaatctggaGAACTAAGTGAATGACATATTTCTTGACTGAAATCAACCATCCAGCC

Function

GO:

id name namespace
GO:0016180 snRNA processing biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-050522-13 Predicted to enable endoribonuclease activity, producing 3'-phosphomonoesters. Acts upstream of or within regulation of RNA splicing. Predicted to be active in nucleus. Orthologous to human INTS11 (integrator complex subunit 11).

Ensembl:

ensembl_id ENSDART00000031016

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044748 lncRNA downstream 57119 36997204 ~ 37000484 (-) True XLOC_022555
TCONS_00045083 lncRNA downstream 188359 36868045 ~ 36869244 (-) True XLOC_022551
TCONS_00045081 lncRNA downstream 302918 36750938 ~ 36754685 (-) False XLOC_022547
TCONS_00045082 lncRNA downstream 303329 36753702 ~ 36754274 (-) True XLOC_022547
TCONS_00045080 lncRNA downstream 448820 36605744 ~ 36608783 (-) True XLOC_022544
TCONS_00044492 lncRNA upstream 205047 37291015 ~ 37291816 (-) True XLOC_022559
TCONS_00044749 lncRNA upstream 437569 37523537 ~ 37525054 (-) True XLOC_022562
TCONS_00045084 lncRNA upstream 635416 37721384 ~ 37724565 (-) False XLOC_022566
TCONS_00045085 lncRNA upstream 636451 37722419 ~ 37724523 (-) False XLOC_022566
TCONS_00045086 lncRNA upstream 636451 37722419 ~ 37724556 (-) False XLOC_022566
TCONS_00044480 mRNA downstream 122659 36889331 ~ 36934944 (-) False XLOC_022553
TCONS_00044481 mRNA downstream 122659 36891680 ~ 36934944 (-) True XLOC_022553
TCONS_00044479 mRNA downstream 146947 36888913 ~ 36910656 (-) False XLOC_022553
TCONS_00044477 mRNA downstream 173313 36870354 ~ 36884290 (-) False XLOC_022552
TCONS_00044478 mRNA downstream 173591 36874769 ~ 36884012 (-) True XLOC_022552
TCONS_00044486 mRNA upstream 9824 37095792 ~ 37113430 (-) False XLOC_022557
TCONS_00044487 mRNA upstream 10247 37096215 ~ 37113396 (-) False XLOC_022557
TCONS_00044488 mRNA upstream 18012 37103980 ~ 37113215 (-) True XLOC_022557
TCONS_00044490 mRNA upstream 201574 37287542 ~ 37291793 (-) False XLOC_022559
TCONS_00044491 mRNA upstream 201575 37287543 ~ 37291840 (-) False XLOC_022559
TCONS_00044482 other downstream 97691 36959791 ~ 36959912 (-) True XLOC_022554
TCONS_00044475 other downstream 229015 36828472 ~ 36828588 (-) True XLOC_022550
TCONS_00044471 other downstream 339108 36718375 ~ 36718495 (-) True XLOC_022548
TCONS_00044467 other downstream 547484 36509997 ~ 36510119 (-) True XLOC_022543
TCONS_00044460 other downstream 639581 36413698 ~ 36418022 (-) False XLOC_022539
TCONS_00044489 other upstream 191105 37277073 ~ 37280713 (-) True XLOC_022558
TCONS_00044499 other upstream 1010852 38096820 ~ 38099972 (-) True XLOC_022568
TCONS_00044500 other upstream 1041484 38127452 ~ 38127569 (-) True XLOC_022569
TCONS_00044502 other upstream 1065447 38151415 ~ 38159744 (-) True XLOC_022570
TCONS_00044508 other upstream 2555996 39641964 ~ 39666458 (-) True XLOC_022580

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00002005 True 4010 mRNA 0.54 18 CM030136.1 298511 ~ 316562 (+)