RNA id: TCONS_00044486


Basic Information

Item Value
RNA id TCONS_00044486
length 2109
RNA type mRNA
GC content 0.45
exon number 12
gene id XLOC_022557
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 37095792 ~ 37113430 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCAGTGTGCACATTCTCGTGAAGCCGCGTGAAGTGAACAGTCCGTCATCATCAGAAGAGTTATCAAGACCGGTTAAAAAGTTAATATATCTGCGATTAAGCCATGTCAACCGACTCGTGGGCTTTAGCTGTGGACGAACAAGAGTCTACAACCAAGCCTGTTGGGAACCTGCGGATTATGGAAGCAGAAAATGCATCTTTGCATCAGAATAATGgtgatgatgaagaagatgaaAAAGAGGACAGAGCCACACAGAGTctcctgaacaagctgatcagaAGCAATCTGGTCAATAACACAAACCAGGTGGAGGTTCTTCAGAGAGACCCAAACTCACCGCTTTATTCAGTCAAGACTTTCGAGGAGCTGAGACTGAAACCTCAGTTGCTCAAAGGCGTCTATGAAATGGGCTTCAACAGACCTTCTAAAATCCAAGAGAATGCCCTTCCCATGATGCTGGCTGAACCACCTCAGAATCTGATTGCTCAGTCTCAGTCTGGCACTGGTAAAACGGCTGCATTCGTTCTGGCTATGCTCAGTCATGTGGACCCAGCCTGTAAATGGTCGCAGTGTTTGTGCATTTCCCCCACATATGAGCTGGCTCTGCAGACGGGCAAAGTCATCGAGCAGATGGGCAAATTTTATCCGGAAGTCACACTGGCATATGCAGTTCGAGGACATAGAATGGAGCGTGGCGTAAGGATCAAGGATCAGATCGTCATCGGCACACCTGGAACGGTTCTGGACTGGTGCATTAAGCTGAAACTCATAGACCCCAAAAAGATCAAAGTGTTTGTTCTGGACGAGGCCGATGTCATGATCGCCACACAGGGACACCAGGACCAGAGCATTCGCATTCAGAGAATGCTGCCCAAAGGCTGCCAGATGCTGCTTTTCTCTGCCACTTTTGAGGACTCTGTGTGGAAGTTTGCCGAGCGGGTCGTGCCTGATCCCAACATCATCAAGCTAAAACGAGAAGAGGAGACCCTGGACACTATCAAGCAGTACTACGTGCTCTGCAACAGCAAAGAAGACAAGTTCAATGCGCTCTGCAACATCTATGGAGCCATCACTATCGCACAAGCTATGATCTTTTGTCATACTAGGAAAATGGCCAACTGGCTTGCTGGCCAGATGTCTAAAGAGGGCCACCAGGTGGCGCTGCTCAGTGGAGAAATGGTGGTCGAGCAAAGAGCCGCAGTTATTGAACGCTTCAGAGACGGCAAGGAGAAAGTCCTCATCACTACTAATGTCTGTGCAAGAGGTATTGATGTTGAACAAGTGTCGGTGGTGATCAACTTTGACCTTCCCCTGGACAAAGATAGCAATCCAGACAACGAGACATACCTCCACCGGATTGGCAGGACTGGGCGGTTTGGCAAGAGAGGACTCGCCATCAACATGGTGGACAGTCAGCGCAGCATGGAGATTCTCAAGACATACGAGAGGCATTTTGGCAAAAAATTGCAAGGCTGGACACGGATGATCTTGACGAAATCGAAAAAATCGCCAGCTGAGGTGATGAAGACCCAAACACTATTTCATTTTATAGCAAAATCAGTTCTGCTGTTACCTCGTTAGATATAAAGCTTGATTAAATCTACATTACAAAGACAGACGTTTACATAAATTCCCCGAAATTTGCTTTAACTTTAGTTTAATGCCAAACAGTTTTGATTCTGAGCTCTTCAAGTTGTTCCAGGAGTTTTTGAATTGGCTTGAGCTTAACAGAGTGTGCTTTGATTTAGAAGTGATCTGCCTGACAAATACCTTACATTTAATCTTGTTTAATGGTTACTGCTTTACTTGGGAATTCTGTCTGTTGTTTACTTGACTAATGAAGCATCTATTTAAATAGTGTTTTGGTCTTATGTTTGAATGGAACAGACAAGCTCAGAAAAATATGTTGGGACTTCAGAATATCTGCAAGCTGGCAGGAAATTATACGATGCATAAAACGCCACAAAGCAGCTCCAAACATTCCTCGAGCACTTTAGAATTAATGACACTTTGTATTGAGAATTATTGTGGAAAAACACAATAGAGTATTGTTGTGATGTAAAACAATGCCTTTGTACTTGAACTGCAGAAAGCATTTAAGCTTAAGC

Function

GO:

id name namespace
GO:0016973 poly(A)+ mRNA export from nucleus biological_process
GO:0005634 nucleus cellular_component
GO:0010494 cytoplasmic stress granule cellular_component
GO:0005524 ATP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003724 RNA helicase activity molecular_function
GO:0004386 helicase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080721-12 Predicted to enable RNA binding activity and RNA helicase activity. Predicted to be involved in poly(A)+ mRNA export from nucleus. Predicted to be active in cytoplasmic stress granule and nucleus. Orthologous to human DDX19A (DEAD-box helicase 19A) and DDX19B (DEAD-box helicase 19B).

Ensembl:

ensembl_id ENSDART00000134461

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044748 lncRNA downstream 95308 36997204 ~ 37000484 (-) True XLOC_022555
TCONS_00045083 lncRNA downstream 226548 36868045 ~ 36869244 (-) True XLOC_022551
TCONS_00045081 lncRNA downstream 341107 36750938 ~ 36754685 (-) False XLOC_022547
TCONS_00045082 lncRNA downstream 341518 36753702 ~ 36754274 (-) True XLOC_022547
TCONS_00045080 lncRNA downstream 487009 36605744 ~ 36608783 (-) True XLOC_022544
TCONS_00044492 lncRNA upstream 177585 37291015 ~ 37291816 (-) True XLOC_022559
TCONS_00044749 lncRNA upstream 410107 37523537 ~ 37525054 (-) True XLOC_022562
TCONS_00045084 lncRNA upstream 607954 37721384 ~ 37724565 (-) False XLOC_022566
TCONS_00045085 lncRNA upstream 608989 37722419 ~ 37724523 (-) False XLOC_022566
TCONS_00045086 lncRNA upstream 608989 37722419 ~ 37724556 (-) False XLOC_022566
TCONS_00044483 mRNA downstream 9824 37057603 ~ 37085968 (-) False XLOC_022556
TCONS_00044484 mRNA downstream 9833 37068071 ~ 37085959 (-) False XLOC_022556
TCONS_00044485 mRNA downstream 10245 37076452 ~ 37085547 (-) True XLOC_022556
TCONS_00044480 mRNA downstream 160848 36889331 ~ 36934944 (-) False XLOC_022553
TCONS_00044481 mRNA downstream 160848 36891680 ~ 36934944 (-) True XLOC_022553
TCONS_00044490 mRNA upstream 174112 37287542 ~ 37291793 (-) False XLOC_022559
TCONS_00044491 mRNA upstream 174113 37287543 ~ 37291840 (-) False XLOC_022559
TCONS_00044493 mRNA upstream 299370 37412800 ~ 37432459 (-) True XLOC_022560
TCONS_00044494 mRNA upstream 380102 37493532 ~ 37514493 (-) True XLOC_022561
TCONS_00044495 mRNA upstream 417288 37530718 ~ 37536127 (-) True XLOC_022563
TCONS_00044482 other downstream 135880 36959791 ~ 36959912 (-) True XLOC_022554
TCONS_00044475 other downstream 267204 36828472 ~ 36828588 (-) True XLOC_022550
TCONS_00044471 other downstream 377297 36718375 ~ 36718495 (-) True XLOC_022548
TCONS_00044467 other downstream 585673 36509997 ~ 36510119 (-) True XLOC_022543
TCONS_00044460 other downstream 677770 36413698 ~ 36418022 (-) False XLOC_022539
TCONS_00044489 other upstream 163643 37277073 ~ 37280713 (-) True XLOC_022558
TCONS_00044499 other upstream 983390 38096820 ~ 38099972 (-) True XLOC_022568
TCONS_00044500 other upstream 1014022 38127452 ~ 38127569 (-) True XLOC_022569
TCONS_00044502 other upstream 1037985 38151415 ~ 38159744 (-) True XLOC_022570
TCONS_00044508 other upstream 2528534 39641964 ~ 39666458 (-) True XLOC_022580

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_01748436_01754956.mRNA True 1677 mRNA 0.47 12 CI01000001 1748338 ~ 1754956 (+)