RNA id: TCONS_00044488


Basic Information

Item Value
RNA id TCONS_00044488
length 602
RNA type mRNA
GC content 0.47
exon number 7
gene id XLOC_022557
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 37095792 ~ 37113430 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGAGTCAGGCGCTGGACGCGTCTCAAATCCTAGTGAACTGCCTACTTTGCGTTTATATGACACAGACGCGTTTGAATAGAGGTTGGGAACCTGCGGATTATGGAAGCAGAAAATGCATCTTTGCATCAGAATAATGGTAGTCCTGCTTTACATGCATTAAAGTgtgatgatgaagaagatgaaAAAGAGGACAGAGCCACACAGAGTctcctgaacaagctgatcagaAGCAATCTGGTCAATAACACAAACCAGGTGGAGGTTCTTCAGAGAGACCCAAACTCACCGCTTTATTCAGTCAAGACTTTCGAGGAGCTGAGACTGAAACCTCAGTTGCTCAAAGGCGTCTATGAAATGGGCTTCAACAGACCTTCTAAAATCCAAGAGAATGCCCTTCCCATGATGCTGGCTGAACCACCTCAGAATCTGATTGCTCAGTCTCAGTCTGGCACTGGTAAAACGGCTGCATTCGTTCTGGCTATGCTCAGTCATGTGGACCCAGCCTGTAAATGGTCGCAGTGTTTGTGCATTTCCCCCACATATGAGCTGGCTCTGCAGACGGGCAAAGTCATCGAGCAGATGGGCAAATTTTATCCGGAAGT

Function

GO:

id name namespace
GO:0016973 poly(A)+ mRNA export from nucleus biological_process
GO:0005634 nucleus cellular_component
GO:0010494 cytoplasmic stress granule cellular_component
GO:0005524 ATP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003724 RNA helicase activity molecular_function
GO:0004386 helicase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080721-12 Predicted to enable RNA binding activity and RNA helicase activity. Predicted to be involved in poly(A)+ mRNA export from nucleus. Predicted to be active in cytoplasmic stress granule and nucleus. Orthologous to human DDX19A (DEAD-box helicase 19A) and DDX19B (DEAD-box helicase 19B).

Ensembl:

ensembl_id ENSDART00000146835

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044748 lncRNA downstream 103496 36997204 ~ 37000484 (-) True XLOC_022555
TCONS_00045083 lncRNA downstream 234736 36868045 ~ 36869244 (-) True XLOC_022551
TCONS_00045081 lncRNA downstream 349295 36750938 ~ 36754685 (-) False XLOC_022547
TCONS_00045082 lncRNA downstream 349706 36753702 ~ 36754274 (-) True XLOC_022547
TCONS_00045080 lncRNA downstream 495197 36605744 ~ 36608783 (-) True XLOC_022544
TCONS_00044492 lncRNA upstream 177800 37291015 ~ 37291816 (-) True XLOC_022559
TCONS_00044749 lncRNA upstream 410322 37523537 ~ 37525054 (-) True XLOC_022562
TCONS_00045084 lncRNA upstream 608169 37721384 ~ 37724565 (-) False XLOC_022566
TCONS_00045085 lncRNA upstream 609204 37722419 ~ 37724523 (-) False XLOC_022566
TCONS_00045086 lncRNA upstream 609204 37722419 ~ 37724556 (-) False XLOC_022566
TCONS_00044483 mRNA downstream 18012 37057603 ~ 37085968 (-) False XLOC_022556
TCONS_00044484 mRNA downstream 18021 37068071 ~ 37085959 (-) False XLOC_022556
TCONS_00044485 mRNA downstream 18433 37076452 ~ 37085547 (-) True XLOC_022556
TCONS_00044480 mRNA downstream 169036 36889331 ~ 36934944 (-) False XLOC_022553
TCONS_00044481 mRNA downstream 169036 36891680 ~ 36934944 (-) True XLOC_022553
TCONS_00044490 mRNA upstream 174327 37287542 ~ 37291793 (-) False XLOC_022559
TCONS_00044491 mRNA upstream 174328 37287543 ~ 37291840 (-) False XLOC_022559
TCONS_00044493 mRNA upstream 299585 37412800 ~ 37432459 (-) True XLOC_022560
TCONS_00044494 mRNA upstream 380317 37493532 ~ 37514493 (-) True XLOC_022561
TCONS_00044495 mRNA upstream 417503 37530718 ~ 37536127 (-) True XLOC_022563
TCONS_00044482 other downstream 144068 36959791 ~ 36959912 (-) True XLOC_022554
TCONS_00044475 other downstream 275392 36828472 ~ 36828588 (-) True XLOC_022550
TCONS_00044471 other downstream 385485 36718375 ~ 36718495 (-) True XLOC_022548
TCONS_00044467 other downstream 593861 36509997 ~ 36510119 (-) True XLOC_022543
TCONS_00044460 other downstream 685958 36413698 ~ 36418022 (-) False XLOC_022539
TCONS_00044489 other upstream 163858 37277073 ~ 37280713 (-) True XLOC_022558
TCONS_00044499 other upstream 983605 38096820 ~ 38099972 (-) True XLOC_022568
TCONS_00044500 other upstream 1014237 38127452 ~ 38127569 (-) True XLOC_022569
TCONS_00044502 other upstream 1038200 38151415 ~ 38159744 (-) True XLOC_022570
TCONS_00044508 other upstream 2528749 39641964 ~ 39666458 (-) True XLOC_022580

Expression Profile

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