RNA id: TCONS_00044493


Basic Information

Item Value
RNA id TCONS_00044493
length 3663
RNA type mRNA
GC content 0.38
exon number 5
gene id XLOC_022560
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 37412800 ~ 37432459 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AtgaatctgctgctgctgctgctctgtgTCCTGCTGGAGATCCTGGCCGTCAGCTgtcAGGATGTGATACAGGCCCGTATCGTGGGTGGATACGTTCCTGCACCATACTCCATCAAGTACATCGTGTCAATTCAGAGTGCCACGGGCCAGCACTTCTGTGGCGGGACTTTAATTAACAAATACTGGGTGCTGACCGCAGCACACTGCAACATAGGGGAAGCCAACATGAGGATCGTGGCTGGAGATTATTCAGTGGGATTATATGAGGGGATGGAGCAGTTTCGCAGGCCTCATATGTTGATACCTCACCCACAATACGACAGAAGCACCAATAACGCAGACATCATGCTCATTAAGCTGCAGTCTCCAGTCTATCTGAACAGCTACGTGTCTCTGGTGCCGCTGCCACGTCAGGACGCAATGGTGGCCGTGGGTCGCCTATGCAGCGTCTCCGGCTGGGGCTTTACCACTTCAACCGGAGGCATCTCTTCAATCCTGCGCACAGTAAAGCTGCCCATCGTGTCCACCGCTGTGTGTAACGGCACAGACTCATTCAATGGAAACATCACCGAGAACATGATCTGTGCAGGATACAGTACAGGAGGAAAAGACGCATGCAAGGGGGATTCTGGAGGGCCTCTGGTGTGCGAGGGCCGCGTCTATGGCATTGTGTCCTGGGGCAATGGCTGCGCTGATGCCCAGTATCCCGGCGTCTACACCGCAGTCTCACAGTTTCGCCAATGGATTGATGCCACTATATTTGGCTTCTATGGAAGATGCCTTACGGACTAAACCTCAGTGTTACCTCAGCACTCCCCCAAAACAAACTTGAAACATGCCAACTTTTACAAGCTTACATCTATTTGGAAAAGTTAGGACCTCTGATGAAGTTCAGACAAGAAACACTGCTGTTCGGAAACGGCACATCTGTTCCTCAACGGCTggtagagattttttttaaacacagtagTTTGTATGTTCGGTAAATGTGCCATATTGCTGCTTCTCTGTAAAGTTGCTGAAAACTAACCTTAGGAGGCTGAAGGaatgttttctgaaaaacacAACAACCACAAATTATATTAAGTGGAATGGTACATGTAAGCAGGGGCAGACTTAACCAATAAGagaggtaagcagccgcttagggcgaATTAGGGGGCCCCAATGTCAAGAAGCCTACTgtatattaatcatatagctcttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgagctatatgattaatatataGTATCATAATATAGTATCATAAAGTATACTGTAGAATCTGGTTTTAATTattaagattttaatgttattactgAATTTATTgtacttaattttaaattaagaagATAAAGGTTGTTTATTTactaaaacaacaataacaacaacaacaacaacaacactaatcaatagaaaaaaataaatatctatatagTTTTGAGTTTCAATGCTTCGGCCCCATAAcaggaattgcttagggcccccaaatcaagTCCACCCCTGCATGTGAGtaactttttaactttaaaattaatGCAATCAAATAGATTTTGATTTGAACCCTAAAAATCCACTTATATACTTTcaaagattttttatatatatatatatatatatatatatatatatatatatataaaaaagagaaaagtgtGTTGTCACACctgtataattttacaaaatgtttacaaatttaacaaaatattaacaaaagtatatattataaagatatatatttgATAATAAGAAaccttggtaacactttacattaaggttgtattagttaaagcatgtactaacatgaacaaacaatgaacaatactacAGTGGTTGTTCAATTTTgataaatgaaaatacagttgttcattcaGTTAACCCAAGGtgtattaactaacgttaacataaatgcattttattactaaatgttgaactatgatcaataaatgctgtacaaacaTTGTTCATAAAtagttcatgtaagtaaatacattaactaatgaaaccttactgtaaaTTGTGATTGACACCTTTCCTAAAAACATATAAGAACATACATAAACGTATAAGATTTTTGAGGGATCATACTTATGACTTGATTGCatgaataaattagattttaaaatatgtatttaaatgctAAACTATGTATTACATATACTACAATGAAAAAGagatgttttgtaatattttaattttttatattttttaaaagtgtattatcATACTTTTACTGTTTGTAAtgtattttggttaaataaatgCAGACTTGGTGAGCACAGAAGACTTATCATTTGTACACTGTTTTACCAGGTTATGGACAACATATTTTACCATTTCACCATAATAGTCATTATggtctaatataataataagagtATACCAATAATTTGATATGTTATGATATGAAAATATTTGTCCAAGCTACAACATACATCCTAAAAATCTGGAATTTGAGGGTTGAAAAAAAGTATAGCTCTTAGCCATACCGGCATAGAAAATagtaacttttcatttttggtCTTAGTTCACAGTGCAACTACGtacaaaagagtcaagctttCAAATAGACAAATAattgaaactctttggtcatttttgagtgagatgctaatggcctaatctgattcaatgcATTCAATGCTAAGCTAAACGTGCTTCTGCCAGACCTGGAAAtaggctgaatggattaaaaaaatgttttaatctcATCTGTTTAACTTTATGTAAATAGTAAAATGAGCCTATATAAAAACTCACTTTGGTTATGAAGCGTTTGGAAACACTCAGGGCTTAAGCTGTGCCAGAGCAcgccggatccggcacctctgaaatctgatccagcacctcattttaccattCCCCTTCCTCAATCTGCATCTCTAgtctagcaaagtgctatgcaggtaaacctcactcctctgaccttacAAGATGCTCCAGCGACacgccatggtctttagcctccttgttagagcaaccgactcccataaaaagaatcgctggttcgattccagctcagaccagattgggtgcagtaggaccggtggatTACATTTGGGGTCTTGTCCAAATGGGAGTGAAGTATAAGGGactgtgtaacagaggccagctagcaaagtgcaaTGTGAATAAATCTCACTCCTccgacctcaaaaggtgctctagcgacagacaacttagaggccatggtctttagcctccttgctaGAATAACCGACTCCCATAGAAAAAATTGCCAGTTCGATTCCAGCTGAGATCAGGTTGGGTGCAATAGGACTAATGGGTTACAATGGTAACATCGgtaaagccgtccacatggaggtaggTGGTCAGCGTGAACAGAAACAGAAGCTGTtggcggcatcataccaccctgcAGCATTAATTTTAAAGACCAAATGCAGCCTTATGCACctatggctacataatttgcgctctccagaaatgtgtacagGGGTaggttttcacaatgagcctgtgttggccaTTGTTGTGTATATTTGTTTGTCCTTGCCTTTAATCTACACACTCCCCTAAACGATGTACCGTATGTGAATGACATTATCATTTTCaaagacttttgtttttgaatgtttacA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005615 extracellular space cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-140106-48 Predicted to enable serine-type endopeptidase activity. Predicted to be involved in proteolysis. Predicted to be active in extracellular space.

Ensembl:

ensembl_id ENSDART00000188916

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044492 lncRNA downstream 120984 37291015 ~ 37291816 (-) True XLOC_022559
TCONS_00044748 lncRNA downstream 412316 36997204 ~ 37000484 (-) True XLOC_022555
TCONS_00045083 lncRNA downstream 543556 36868045 ~ 36869244 (-) True XLOC_022551
TCONS_00045081 lncRNA downstream 658115 36750938 ~ 36754685 (-) False XLOC_022547
TCONS_00045082 lncRNA downstream 658526 36753702 ~ 36754274 (-) True XLOC_022547
TCONS_00044749 lncRNA upstream 91078 37523537 ~ 37525054 (-) True XLOC_022562
TCONS_00045084 lncRNA upstream 288925 37721384 ~ 37724565 (-) False XLOC_022566
TCONS_00045085 lncRNA upstream 289960 37722419 ~ 37724523 (-) False XLOC_022566
TCONS_00045086 lncRNA upstream 289960 37722419 ~ 37724556 (-) False XLOC_022566
TCONS_00045087 lncRNA upstream 289960 37722419 ~ 37724564 (-) False XLOC_022566
TCONS_00044491 mRNA downstream 120960 37287543 ~ 37291840 (-) False XLOC_022559
TCONS_00044490 mRNA downstream 121007 37287542 ~ 37291793 (-) False XLOC_022559
TCONS_00044486 mRNA downstream 299370 37095792 ~ 37113430 (-) False XLOC_022557
TCONS_00044487 mRNA downstream 299404 37096215 ~ 37113396 (-) False XLOC_022557
TCONS_00044488 mRNA downstream 299585 37103980 ~ 37113215 (-) True XLOC_022557
TCONS_00044494 mRNA upstream 61073 37493532 ~ 37514493 (-) True XLOC_022561
TCONS_00044495 mRNA upstream 98259 37530718 ~ 37536127 (-) True XLOC_022563
TCONS_00044496 mRNA upstream 106609 37539068 ~ 37546696 (-) True XLOC_022564
TCONS_00044497 mRNA upstream 133638 37566097 ~ 37575030 (-) True XLOC_022565
TCONS_00044498 mRNA upstream 391101 37823560 ~ 37835794 (-) True XLOC_022567
TCONS_00044489 other downstream 132087 37277073 ~ 37280713 (-) True XLOC_022558
TCONS_00044482 other downstream 452888 36959791 ~ 36959912 (-) True XLOC_022554
TCONS_00044475 other downstream 584212 36828472 ~ 36828588 (-) True XLOC_022550
TCONS_00044471 other downstream 694305 36718375 ~ 36718495 (-) True XLOC_022548
TCONS_00044467 other downstream 902681 36509997 ~ 36510119 (-) True XLOC_022543
TCONS_00044499 other upstream 664361 38096820 ~ 38099972 (-) True XLOC_022568
TCONS_00044500 other upstream 694993 38127452 ~ 38127569 (-) True XLOC_022569
TCONS_00044502 other upstream 718956 38151415 ~ 38159744 (-) True XLOC_022570
TCONS_00044508 other upstream 2209505 39641964 ~ 39666458 (-) True XLOC_022580
TCONS_00044515 other upstream 2512193 39944652 ~ 39945578 (-) True XLOC_022587

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_01589727_01595957.mRNA True 968 mRNA 0.49 4 CI01000001 1589727 ~ 1596289 (+)