RNA id: TCONS_00044494


Basic Information

Item Value
RNA id TCONS_00044494
length 2349
RNA type mRNA
GC content 0.46
exon number 15
gene id XLOC_022561
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 37493532 ~ 37514493 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCGGACGGTGGTGGGGTTGCTCTCTGTGATTATGCTGTATGTGCTCCTGAATGATGCTACGGTGGAAAGCACTGCAGAATTTGATCCATATAAGGTTTTAGGAGTCACCAGAAGTGCAAGCCAAGCAGAAATCAAGAAAGTCTACAAACGCCTGGCCAAAGAATGGCATcctgataaaaacaaaaatcctGAAGCAGAAGACATGTTCATCAAGATTACAAAGTCTTATGAGATCTTAACAAATGAGGAGAAGAGAGCCAGTTACGATCGCTATGGACAAACAGATGATACTCAACCGTATGGCCACCGTCATCACGGATTCCGGCACTTTCATGACAACTTCTACTTCGACGAGTCTTTCTTCCACTTTCCCTTCAACAATAAGGGAGGCCGGGACTTCGCTGACAGCAAGTACACGTTGCACTTCAACCAGTATGTCAACGAAGTCGTTCCCGACAGCTTCAAGAGGCCTTACTTGATCAAGATAACCTCAGATTGGTGCTTCAGCTGCATACATATCGAGCCAGTCTGGAAAGAAACAGTGCAGGAGTTGGAAACTCTGGGAATTGGGATTGGTGTGGTTGATGTCGGATACGAGCGACGTTTAGCAAATCACTTGGGCGCACATCAGACTCCATCCATCCTTGGTGTCGTCAATGGAAAAGTCTCTTTCTTTCATTACGCTGTCGTCAAAGAACACTTGATACAGTTTGTAGATGACTTGCTGCCACAAAGACTAATTGAAAAGGTTACAGATAAGAACAACCACGAGTTTCTGAAGAGCTGGCATGAGCTGAACAAGCCACATGTACTCCTGTTTGACCAAGTGCCTTCTGTTCCTCTGCTTTATAAGCTTACAGCGTTTGCCTTCAAGGATTATGTGCAGTTTGGATATGTAGATCAAGGTCTTTCTGAGACTGCTGAGCTGCTCAGAAAGTTCAATATAAACACTTATGCGCCGACCATGCTGGTTTTCAAAGAGGACGTGGAGAAGCCTGCCGACATAATACAGGCTAAAGGGATGAAGAAGCAGATAATAGACGAGTTCATCTCCAACAACAAGTTCCTCCTGGCTCCTCGTCTGGTTAATCAAAAGCTATTCGACGAGCTTTGTCCTGTCAAACAGTTCCATCGACGCAGGAAATATTGCATTCTACTCATCACTGGTGAAGACGAGTCCTACATCCCTGGAAATGAAGCCTTCCTCTTGCTAGCCTCTGCTAATGCTAATGACGTACTGCGGTTTGCATACGTTTACCATCGACGTCAACAGCCTCTATGTGACATTCTGCTAAAGGACAAAGATGACACAGCACCACAGCAGGTGGTGATTTTAGAGAGGCGCAACGGGGCTGGAAAGATTCTTTATAAGCCGTTATTGGGAGGATGGAACGGCAGTAAGGAGGACAAACACAAACTCCTGGAGGAGCTGCAAAGACTGCAGAAAGATCCCTCCATCCTCAACTACAATGCCATCCTGCCAGAGCTCAACAATGAGTTTGCTTCTATGTTTTTAGTGAGATGGATTTACACGGCATATGATTACTTGTCTGAAATTATCGACGACCTTCTTCATAATAACTGGCGTGAGATGATGCCCCTTCTGTCCTTGATATTCTCTGCactctttattttatttggcACTGTAGTTATTCAAGCTTTCAGTGACTCAAGTGAGGAAAAACAGcccaaaatgaaagtgaaagagaCAAAGAGCGAGAACGGTTCGCCAAACACCTCCAACGCATCCAGTCGGCCACCAAAGAAGAACTTTGTGGAGGTGACAGAGTTGACTGACATCACTTATACCAGTAACCTGGTGAAGCTGAGGCCGGGTCACATTAATGTAGTGCTGGTTCTTACTGATGGCACCAAAAACATCCTGCTCAGCAAGTTTGCCAAGGAGGTTTATTCATTCACCGGGAGTTTGACGCTCCACTTCTCCTTCCTGAATGTGGATAAACACAAAGAATGGATGGCAGCGGTGCTGGAATTTGCCCAGGACGCCATGCAGATCGACACAGATGAGGATGAAATGGGCACTCGTAAAGTCGACTACACTGGCTATGTCCTAGCGCTCAATGGCCATAAGAAATACCTGTGTCTCTTTAAGCCAGTCTACACGGGAGAAGACTTGGATGGAAAAGCAGAAGAGGAAGGAGGAGTATCGCGATCCAGAAAAAGCACGACACGTTCTCGATCCACATCTCTTCAGATCCACCACAAACTGGACCGACTCGGCCTATGGATGGAGCGGCTGATGGAAGGGACTCTGCCCCGATACTATGTCCCAGCCTGGCCCGGTCTGGATAAGATCACCAGTTTTTGCCTCATGACGTCAACGTGA

Function

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko03110 Chaperones and folding catalysts

ZFIN:

id description
ZDB-GENE-130530-683 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human DNAJC16 (DnaJ heat shock protein family (Hsp40) member C16).

Ensembl:

ensembl_id ENSDART00000083267

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044492 lncRNA downstream 201716 37291015 ~ 37291816 (-) True XLOC_022559
TCONS_00044748 lncRNA downstream 493048 36997204 ~ 37000484 (-) True XLOC_022555
TCONS_00045083 lncRNA downstream 624288 36868045 ~ 36869244 (-) True XLOC_022551
TCONS_00045081 lncRNA downstream 738847 36750938 ~ 36754685 (-) False XLOC_022547
TCONS_00044749 lncRNA upstream 9044 37523537 ~ 37525054 (-) True XLOC_022562
TCONS_00045084 lncRNA upstream 206891 37721384 ~ 37724565 (-) False XLOC_022566
TCONS_00045085 lncRNA upstream 207926 37722419 ~ 37724523 (-) False XLOC_022566
TCONS_00045086 lncRNA upstream 207926 37722419 ~ 37724556 (-) False XLOC_022566
TCONS_00045087 lncRNA upstream 207926 37722419 ~ 37724564 (-) False XLOC_022566
TCONS_00044493 mRNA downstream 61073 37412800 ~ 37432459 (-) True XLOC_022560
TCONS_00044491 mRNA downstream 201692 37287543 ~ 37291840 (-) False XLOC_022559
TCONS_00044490 mRNA downstream 201739 37287542 ~ 37291793 (-) False XLOC_022559
TCONS_00044486 mRNA downstream 380102 37095792 ~ 37113430 (-) False XLOC_022557
TCONS_00044495 mRNA upstream 16225 37530718 ~ 37536127 (-) True XLOC_022563
TCONS_00044496 mRNA upstream 24575 37539068 ~ 37546696 (-) True XLOC_022564
TCONS_00044497 mRNA upstream 51604 37566097 ~ 37575030 (-) True XLOC_022565
TCONS_00044498 mRNA upstream 309067 37823560 ~ 37835794 (-) True XLOC_022567
TCONS_00044501 mRNA upstream 636900 38151393 ~ 38160024 (-) False XLOC_022570
TCONS_00044489 other downstream 212819 37277073 ~ 37280713 (-) True XLOC_022558
TCONS_00044482 other downstream 533620 36959791 ~ 36959912 (-) True XLOC_022554
TCONS_00044475 other downstream 664944 36828472 ~ 36828588 (-) True XLOC_022550
TCONS_00044471 other downstream 775037 36718375 ~ 36718495 (-) True XLOC_022548
TCONS_00044467 other downstream 983413 36509997 ~ 36510119 (-) True XLOC_022543
TCONS_00044499 other upstream 582327 38096820 ~ 38099972 (-) True XLOC_022568
TCONS_00044500 other upstream 612959 38127452 ~ 38127569 (-) True XLOC_022569
TCONS_00044502 other upstream 636922 38151415 ~ 38159744 (-) True XLOC_022570
TCONS_00044508 other upstream 2127471 39641964 ~ 39666458 (-) True XLOC_022580
TCONS_00044515 other upstream 2430159 39944652 ~ 39945578 (-) True XLOC_022587

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_01545235_01551987.mRNA True 2292 mRNA 0.47 13 CI01000001 1545235 ~ 1552023 (+)