RNA id: TCONS_00044495


Basic Information

Item Value
RNA id TCONS_00044495
length 1056
RNA type mRNA
GC content 0.41
exon number 5
gene id XLOC_022563
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 37530718 ~ 37536127 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGACTTGACAAAACGAAAGCGATACTGCAAGTTTTAACAATGAGAGCTCGGCATTGTATGATAGTTTTATTGTTGGGATGTAATATAACTTTCTCTTTAGGTTTTCTTGACGTTGTAGTGGCTGTGGCATCTCATGTGTTTGACAAACTGTTTAAAACTGACGGTTTGCTGCCTTTTAACCGTACACGTTTACAGGCAGATTTTGACAAATCTCTCTACGGACAGCACATCGTCTCTGATGTTGTGCCAAAATCTGTATCATTCTTCATGACTGACAAAAACCCAAACAAACCTCTGGTCCTTTCTTTCCATGGGACTGCGGGAACTGGAAAAAACCACGTTGCTAAAATCATCgcaagaaatgtatataaaaaaggagAGAAAAGCAAGCACGTTCACACATTTATATCTCAGTTTCATTTCCCACATCAAGAAAATGTGCACATGTACAGTGCTCAGCTAAAGCAGTGGATTCATGGAAATGTATCCAGCTTTCCCCGCTCCATGTTTATATTTGATGAAATGGACAAAATGCATCCAGAGCTGATCGACATCATAAAACCTTTTCTAGACTACAATTACAATGTGGATGGAGTATCATTTCACACTGCGATCTTCATTTTTCTAAGTAATGCAGGTGGCAATGTGATTGTTGACTTGGCTCTGGACTTCTGGAGAAAAGGGAAAAGTCGGGAAGAACTAAGGATGAACAGCAGCAAGCTGGAGACTAAAATCTCTAAAGACATCTTTAATGGAAACAGTGGATTTCTGCACTCTAGTCTCATAGATCATCATCTGATTGATCACTTTGTTCCCTTCCTACCTCTGGAGTTGAAGCATGTGCGCCAGTGTGTCTTGGCTGAGATGGAGCATCTAGAGATCCCAAAAAATGATGATCTGGCAGATAAAGTGGCCCAAGACATGCCTTACTTCCCTGATGAAGAGCGAATCTTTGCTGTTAAAGGCTGCAAGTCAGTCAGACAGAAGTTGGTGATGCATGCTGATGAATAGAAGACACACTTTTTCGCCTTATTTTTGACCTTGGACTCTCCACCA

Function

GO:

id name namespace
GO:0045104 intermediate filament cytoskeleton organization biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0034504 protein localization to nucleus biological_process
GO:0006998 nuclear envelope organization biological_process
GO:0061077 chaperone-mediated protein folding biological_process
GO:0051085 chaperone cofactor-dependent protein refolding biological_process
GO:0071763 nuclear membrane organization biological_process
GO:0031175 neuron projection development biological_process
GO:0007155 cell adhesion biological_process
GO:0072321 chaperone-mediated protein transport biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005788 endoplasmic reticulum lumen cellular_component
GO:0005635 nuclear envelope cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0019894 kinesin binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016887 ATPase activity molecular_function
GO:0051082 unfolded protein binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080723-36 Predicted to enable kinesin binding activity. Predicted to be involved in nuclear membrane organization and protein localization to nucleus. Predicted to act upstream of or within chaperone cofactor-dependent protein refolding and endoplasmic reticulum organization. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum lumen and nuclear envelope.

Ensembl:

ensembl_id ENSDART00000078253

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044749 lncRNA downstream 5664 37523537 ~ 37525054 (-) True XLOC_022562
TCONS_00044492 lncRNA downstream 238902 37291015 ~ 37291816 (-) True XLOC_022559
TCONS_00044748 lncRNA downstream 530234 36997204 ~ 37000484 (-) True XLOC_022555
TCONS_00045083 lncRNA downstream 661474 36868045 ~ 36869244 (-) True XLOC_022551
TCONS_00045081 lncRNA downstream 776033 36750938 ~ 36754685 (-) False XLOC_022547
TCONS_00045084 lncRNA upstream 185257 37721384 ~ 37724565 (-) False XLOC_022566
TCONS_00045085 lncRNA upstream 186292 37722419 ~ 37724523 (-) False XLOC_022566
TCONS_00045086 lncRNA upstream 186292 37722419 ~ 37724556 (-) False XLOC_022566
TCONS_00045087 lncRNA upstream 186292 37722419 ~ 37724564 (-) False XLOC_022566
TCONS_00045088 lncRNA upstream 186292 37722419 ~ 37724683 (-) True XLOC_022566
TCONS_00044494 mRNA downstream 16225 37493532 ~ 37514493 (-) True XLOC_022561
TCONS_00044493 mRNA downstream 98259 37412800 ~ 37432459 (-) True XLOC_022560
TCONS_00044491 mRNA downstream 238878 37287543 ~ 37291840 (-) False XLOC_022559
TCONS_00044490 mRNA downstream 238925 37287542 ~ 37291793 (-) False XLOC_022559
TCONS_00044487 mRNA downstream 417322 37096215 ~ 37113396 (-) False XLOC_022557
TCONS_00044496 mRNA upstream 2941 37539068 ~ 37546696 (-) True XLOC_022564
TCONS_00044497 mRNA upstream 29970 37566097 ~ 37575030 (-) True XLOC_022565
TCONS_00044498 mRNA upstream 287433 37823560 ~ 37835794 (-) True XLOC_022567
TCONS_00044501 mRNA upstream 615266 38151393 ~ 38160024 (-) False XLOC_022570
TCONS_00044503 mRNA upstream 793393 38329520 ~ 38330746 (-) True XLOC_022571
TCONS_00044489 other downstream 250005 37277073 ~ 37280713 (-) True XLOC_022558
TCONS_00044482 other downstream 570806 36959791 ~ 36959912 (-) True XLOC_022554
TCONS_00044475 other downstream 702130 36828472 ~ 36828588 (-) True XLOC_022550
TCONS_00044471 other downstream 812223 36718375 ~ 36718495 (-) True XLOC_022548
TCONS_00044467 other downstream 1020599 36509997 ~ 36510119 (-) True XLOC_022543
TCONS_00044499 other upstream 560693 38096820 ~ 38099972 (-) True XLOC_022568
TCONS_00044500 other upstream 591325 38127452 ~ 38127569 (-) True XLOC_022569
TCONS_00044502 other upstream 615288 38151415 ~ 38159744 (-) True XLOC_022570
TCONS_00044508 other upstream 2105837 39641964 ~ 39666458 (-) True XLOC_022580
TCONS_00044515 other upstream 2408525 39944652 ~ 39945578 (-) True XLOC_022587

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_01517517_01521698.mRNA True 1652 mRNA 0.38 5 CI01000001 1517182 ~ 1522043 (+)