RNA id: TCONS_00045086


Basic Information

Item Value
RNA id TCONS_00045086
length 1863
lncRNA type inter_gene
GC content 0.32
exon number 2
gene id XLOC_022566
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 37721384 ~ 37724683 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cttttattttgaaagacaCTCCCTCACAGGGGAACCGCTGTTATTATTTTGGTTCTTAgcacatttcaaaattaatttcaaCGAAACACATTTAACAAAGACGACAAAACTAAACCGAAAAATGCAACCAAAGTGAAACTATTACAgagcatattttatatatataaaacaattgcaagctcaataaatataacaaacacAAAATGCCTAGTAGGTAAACATATACAGTAATACACCATATTTATTGGGGGCAGCGTCTTTTAGGGTTGTATCTTTCAGATAAGGAGTTGGTTTTAGTTTAGCGAAGCACCAGGCAGTTTCAGCTCAACATGTCGGGTAACAGCAGTATCAAATCATAAGCTGCAGAAATCATCAATACATAAACGGGAACATCTGAAAACTACCTCAAGCTTCCACTTAAACCAAACACTCATAAGTGCTCAATCGGTTACAAACCAAAAACACAGTCTGTTAAACAAGTCATTTATGAATCCTTTAGACGTAATATACAGTAAGGGATTCTTTAAATAAAGCCGTGGCAAAACATCTATATTCATACAGAAATATTGACTCCATCCTgttaatgaaaataacactggtccaaatgaaatgtttaatatgccttaaagagacagttcatcatttactcaaccctcCATTTGATCCAAACATAATTGAGatcatttcttctgttgaacacaaaaagaagatatttcgaagaatgtttcCATAGGATTTGTTTTTTGCTTTCATGGACGTCAATGGTACGCTACATtctttaatatatatgtatatatatttttatgttcaatgGTAAAAGATGGagagtaaatgtttgtttttgggtgtactgtcactttaagagctgCTCAAGTTCTCTGAAGTCAAACAGTGATTTCGTTTATATAGGTCAAGATCTCCATCATTTACATTCataaactctctctctcactccaaacctgtttgagttttttcattggttaaacacaaaaagaagatattttgaagaatgttgtagaACTTAAGTCCAAAGGATGTTTTTTTCCTATGTATGTCAATGGTTTgcttcattcttcaaaatatgtattttttttatgttcaacggttaaagagagtgagtaaatgtttgtttttgggtGTAATGTCGCTTTAAGAGCTGCTCAAGTTCTCTGAAGCCAAACAGTGATTTGGTTTTTATAGGTCGAAATCTCACTGCTTCACATTCATAAACTCTCTCCAAATCTGTTAAGAGTTTGTTTCTttcgttgaacacaaaaagaagatgtattgaagaatgtaaaaaaaattggattggagtcttttgttgaacacacaaagaagatatttcgaagaatgttgtaGAACTTAATTCCATATGTTTAGTTTTTCCTATTATGCATGTCAATGGTTTAGTACAATcttatatatgtaaataatttttaattttttatgttcaacagttaaaagaggatgagtaaatggttgtttttgggtgtactgtcGCTTTAAGGGATGCTCAAGGTCTCTGATGTCAAacagtgatttgtttttttttataggtggagaactcactcattcacattcataaacTCTCCCTCTCCAAACCTGTTAGAGTTtgtttcttgtgttgaacacaaaaagaagatacttAGAAGAATGTTGTAGTACTTAATTCCAcaggatttgttttttttcttattgtagaTGTCAATGGTTTGctacattcttcaatatatatatataattttcttacttagattttttgtcttgtttctagtccaaatatctaaaaattcctaactcaagaagaattttcaagacaagaaaaacatattgtcttgtttagagaaataatatgccaat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044749 lncRNA downstream 197365 37523537 ~ 37525054 (-) True XLOC_022562
TCONS_00044492 lncRNA downstream 430603 37291015 ~ 37291816 (-) True XLOC_022559
TCONS_00044748 lncRNA downstream 721935 36997204 ~ 37000484 (-) True XLOC_022555
TCONS_00045083 lncRNA downstream 853175 36868045 ~ 36869244 (-) True XLOC_022551
TCONS_00045082 lncRNA downstream 968145 36753702 ~ 36754274 (-) True XLOC_022547
TCONS_00045089 lncRNA upstream 733040 38457596 ~ 38497566 (-) False XLOC_022572
TCONS_00044750 lncRNA upstream 748578 38473134 ~ 38647152 (-) False XLOC_022573
TCONS_00045090 lncRNA upstream 762859 38487415 ~ 38497756 (-) False XLOC_022572
TCONS_00045091 lncRNA upstream 770047 38494603 ~ 38497628 (-) True XLOC_022572
TCONS_00045093 lncRNA upstream 783919 38508475 ~ 38634582 (-) False XLOC_022573
TCONS_00044497 mRNA downstream 147389 37566097 ~ 37575030 (-) True XLOC_022565
TCONS_00044496 mRNA downstream 175723 37539068 ~ 37546696 (-) True XLOC_022564
TCONS_00044495 mRNA downstream 186292 37530718 ~ 37536127 (-) True XLOC_022563
TCONS_00044494 mRNA downstream 207926 37493532 ~ 37514493 (-) True XLOC_022561
TCONS_00044493 mRNA downstream 289960 37412800 ~ 37432459 (-) True XLOC_022560
TCONS_00044498 mRNA upstream 99004 37823560 ~ 37835794 (-) True XLOC_022567
TCONS_00044501 mRNA upstream 426837 38151393 ~ 38160024 (-) False XLOC_022570
TCONS_00044503 mRNA upstream 604964 38329520 ~ 38330746 (-) True XLOC_022571
TCONS_00044504 mRNA upstream 655071 38379627 ~ 38497705 (-) False XLOC_022572
TCONS_00044505 mRNA upstream 1907841 39632397 ~ 39666658 (-) False XLOC_022580
TCONS_00044489 other downstream 441706 37277073 ~ 37280713 (-) True XLOC_022558
TCONS_00044482 other downstream 762507 36959791 ~ 36959912 (-) True XLOC_022554
TCONS_00044475 other downstream 893831 36828472 ~ 36828588 (-) True XLOC_022550
TCONS_00044471 other downstream 1003924 36718375 ~ 36718495 (-) True XLOC_022548
TCONS_00044467 other downstream 1212300 36509997 ~ 36510119 (-) True XLOC_022543
TCONS_00044499 other upstream 372264 38096820 ~ 38099972 (-) True XLOC_022568
TCONS_00044500 other upstream 402896 38127452 ~ 38127569 (-) True XLOC_022569
TCONS_00044502 other upstream 426859 38151415 ~ 38159744 (-) True XLOC_022570
TCONS_00044508 other upstream 1917408 39641964 ~ 39666458 (-) True XLOC_022580
TCONS_00044515 other upstream 2220096 39944652 ~ 39945578 (-) True XLOC_022587

Expression Profile

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