RNA id: TCONS_00044499


Basic Information

Item Value
RNA id TCONS_00044499
length 823
RNA type processed_transcript
GC content 0.32
exon number 4
gene id XLOC_022568
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 38096820 ~ 38099972 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaggttcattgcgatcccaaggttcactgcggttttccacaagatgcagaaacttttatacatatgaattcatcttgactaaggaactCTTCACAGCACAGCATTTGAACAGTCACAACCTCACAGAGCTGCACAACTGCCCCACTCAGATCAGTGTTGAAGCTGGAACCTCATCTTGTGTACAGCAAAGGCAGAGCTGAAAATTCACTGTTTGTCTTGTATTGTGTGTGGCAAAACCTGGAATAACACAtgggagccctccaggaattcctCACATTTTACGCCCAAGTCTCCTCATGCTAACCGGattgcaatatgacagtctagtcagcataaacacctggactcaccaagcacactttggttctcagtgttttgtaaaaattgtttttgctattcttcagtaaatacttgaatatgttttgaacttattctacttttgatgtttaagttcagaaagttgttattataaacataatttgcatttgtcatgaacttgacttcttgttgttgtgaaagctgtttattataatggcatttccaaaggcatcatttgaaaagattttttgcagtgcagtattACTTCAGCTTGACATACCAGATGTATGacataaataaatatcacaaaataaatataataataataatacaaaatatacatttccttcaattataattgtttttaatcatttatatatgtatggtaatatattattgcattaaaaactgttataaaataaatatttttggtttttgcaTTTTTgcgtgatttttattatttattttatttgtggcattataaataaattataaatatttcatt

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000140013

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045088 lncRNA downstream 372137 37722419 ~ 37724683 (-) True XLOC_022566
TCONS_00045084 lncRNA downstream 372255 37721384 ~ 37724565 (-) False XLOC_022566
TCONS_00045087 lncRNA downstream 372256 37722419 ~ 37724564 (-) False XLOC_022566
TCONS_00045086 lncRNA downstream 372264 37722419 ~ 37724556 (-) False XLOC_022566
TCONS_00045085 lncRNA downstream 372297 37722419 ~ 37724523 (-) False XLOC_022566
TCONS_00045089 lncRNA upstream 357624 38457596 ~ 38497566 (-) False XLOC_022572
TCONS_00044750 lncRNA upstream 373162 38473134 ~ 38647152 (-) False XLOC_022573
TCONS_00045090 lncRNA upstream 387443 38487415 ~ 38497756 (-) False XLOC_022572
TCONS_00045091 lncRNA upstream 394631 38494603 ~ 38497628 (-) True XLOC_022572
TCONS_00045093 lncRNA upstream 408503 38508475 ~ 38634582 (-) False XLOC_022573
TCONS_00044498 mRNA downstream 261026 37823560 ~ 37835794 (-) True XLOC_022567
TCONS_00044497 mRNA downstream 521790 37566097 ~ 37575030 (-) True XLOC_022565
TCONS_00044496 mRNA downstream 550124 37539068 ~ 37546696 (-) True XLOC_022564
TCONS_00044495 mRNA downstream 560693 37530718 ~ 37536127 (-) True XLOC_022563
TCONS_00044494 mRNA downstream 582327 37493532 ~ 37514493 (-) True XLOC_022561
TCONS_00044501 mRNA upstream 51421 38151393 ~ 38160024 (-) False XLOC_022570
TCONS_00044503 mRNA upstream 229548 38329520 ~ 38330746 (-) True XLOC_022571
TCONS_00044504 mRNA upstream 279655 38379627 ~ 38497705 (-) False XLOC_022572
TCONS_00044505 mRNA upstream 1532425 39632397 ~ 39666658 (-) False XLOC_022580
TCONS_00044506 mRNA upstream 1532688 39632660 ~ 39636195 (-) False XLOC_022580
TCONS_00044489 other downstream 816107 37277073 ~ 37280713 (-) True XLOC_022558
TCONS_00044482 other downstream 1136908 36959791 ~ 36959912 (-) True XLOC_022554
TCONS_00044475 other downstream 1268232 36828472 ~ 36828588 (-) True XLOC_022550
TCONS_00044471 other downstream 1378325 36718375 ~ 36718495 (-) True XLOC_022548
TCONS_00044467 other downstream 1586701 36509997 ~ 36510119 (-) True XLOC_022543
TCONS_00044500 other upstream 27480 38127452 ~ 38127569 (-) True XLOC_022569
TCONS_00044502 other upstream 51443 38151415 ~ 38159744 (-) True XLOC_022570
TCONS_00044508 other upstream 1541992 39641964 ~ 39666458 (-) True XLOC_022580
TCONS_00044515 other upstream 1844680 39944652 ~ 39945578 (-) True XLOC_022587
TCONS_00044516 other upstream 1851581 39951553 ~ 39952406 (-) True XLOC_022588

Expression Profile

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