RNA id: TCONS_00044504


Basic Information

Item Value
RNA id TCONS_00044504
length 3643
RNA type mRNA
GC content 0.50
exon number 2
gene id XLOC_022572
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 38379627 ~ 38497756 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCCAGCATACAGACAGTACGAGGCTGCTCTTGTGGGCTGTCTCATGTTTTCTCCGGCCTCTGTCTCTTTAATAAACTCGTGGTTATCTAGTGTAACAAATGTCTCGCTGCCATCATCAAGtccagaggaggaggaggaggaggagtttttaatgttcagtttgttcTATGGATCGATGTTTGCTGCTGGCAtcgccgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgatatacaCTATTTTTTTCTGCCCTTTTCCTACTACGTTTCATACGAGACCGGGAGTCTAAGCGATTGACAGCGTTCGTCCTTTTGGCTTtggaaacaaaaaaagaaaagaagaagaagaagagacggaaagaaaagcaaagcaaaacaatccGCCATAGATCTAGGACGGAGAGGTATATTAAAAAGAGACACCTGATTTTCTGGacagcgtttgtgagatactggATTGTACGGGACTGAAGTGCTTTAGAGAGTCGCTATTGCGTGTGTATGGACTATATCAGAGCGCTTATACTGAATTTCACCTGGGCTCCGTTTCACTGTACGTGAACTAAAGAGAGAGTTGAACATGCCAAGGAGGAAACAGCAGGCACCCAAAAGGGCTGCGGCATACGAGCCAGATGACGAGGTCGGTGTCCAAGAGTCGATCGAAGAGGAGGAGGGCGAAAATGCAATGCAGACCGAGGAGGAGAATTCAGAAAGGCCCACTTCCAAGGACAAAGACGACAAAGACATAGACAACAAAAGCAGCTACAGCTTTCAGAACTCTCCGGTCAGTGTCCTCTCCAACCAGGAGGTTGAGCTGGAATCCCGGCTGAGCGATGGCAGTGACAGACTGTCTGACTTTAAGACCTCACCACCAGGAAGTCAGAAGGACACCGAGACCCAGAGCTCCAAGCTGAAGGATGACATGCACAGTAGCCTGGAGAAAATGAGGGCTGCCTATGCCAACTTCCTTTCAGACTCCTACTGGTCAAAGATTGGACTAGATTTGAAGGTTGCTAACACTGGCAGCAAAGCAAACTGTGACAGCACCAACGGGAGCACCAAGAGTGAGTTTGACTGGCACCAGGACGCACTTTCCAAAACCCTGCAGCAAACACTGTCCCCGAAACCCGTGTCAAAGCCTAATCTATTCAGCTCCGTCCACCTGTACAGGCAAAATAGCAAAGCGTGCGGCGCGGTCTTCACAGGGGCCAGTCGATTTCGCTGCAAGGACTGCAGTGCAGCGTATGACACCCTGGTGGAGTTGACGGTGCACATGAACAAGAGCGGCCACTATCAGGATGACAACCATAGCAGGCAAAACATCGCCTCCACTTCGTCGTCAAAGAACCGAAAGAGGAACCTTCAGGACATGGAAGGCAAGGAAGATGCGCAAAAAGTGCTCAAGTGCATGTTCTGCGGCCACTCGTTCGACTCTCTGCAAGACCTGAGTGTGCACATGATCAAAACGAAGCATTACCAGAAAGTGCCTTTGAAAGAACCAATTCCAGTAATCACTCCCAAACTAATCCCACCAGCAAAGAAACGTGCATTTGAAGCCACAAGGCCTTGTTCGCCCGACTCAACCACAGGGGTTTCAGGTTACACCGATGCCCAAAGGTCGTCCGGCCTTGCCAATGCTCCCAACAACCGCTACGGCTATCAGAACGGTGCTAGTTACACATGGCAGTTTGAGACGTGCAAATCTCAGATCCTGAAGTGCATGGAGTGCGGAAGCTCCCATGATACTCTCCAGCAGCTCACCACTCACATGATGGTCACCGGGCACTTCATTAAAGTGACAAACTCAGCCTCCAAAAAAGGCAAACAGCTAGCCCTCGATCCTCTAGCAATAGAGAAAATGCAGACTCTTGCTGAACCCACAGTGAACGAACTTGAAGGAGAAAAGGTTTCTCCAAAAAGCACAGCATCCGGTGATTCGGAGAGGGCTACCCCAAGAGATATGTCACCGGATAAAGCTGAGAAAAACGAGGACAAGGATGACAAACAAGATGAAGAGGAACGGAAGCCCACTGACGGTAATTTTAAGTATCCGTACTTGCGGGAGGAAGACCTTGAGCAGCAGGGGTCCTCCGGAGGGGGGGACATTCTCAAGTCTTTAGCAAACACGGTGGCTTCGGCAATCAATAAAGCTCAAACAGGGACCCCCAGCTGGAGCGCTTACCCCAGCATTCATGCGGCGTACCAGCTATCAGGGGTGATCAAGACCGCCTCCTTTTCCCCTTCTCCTCCCATCCAGCTCAAGCAGAATCTTAACCATAAGCACAGACCCATCGCTCCCAAGGGGAAGTTCTATCAGGCACTTCGGGGACTTGAAAGTTTCCAGGGACATCACAATTCGGACATCAAAAAGGAAAGGGGTGGCGCATCTGACGGCAAAGAGAGCCAGAGCAGTAGGTTTGATCTGGTGGAGAATGATGACAGTGATTGTCAAGATGATTCCTCCTCCTCTTCAAAGCTGGATGCAGACTGTGTAAGTGAAGAGAATGACACAATCAAAGGGAAGTTGAGCCCGGCTTTCTCTGACAGAGGGAACCCGTCACCTAGCCCCCCTGCCAGCAATGGGCACAGCACTTCTTCAGAGCTTGTCAACGATTCCCAGGAAGTCCTTAGCATAAACCCTCTAAGCGCACTTCAGTCTGTCTTAAACAATCATTTGGGTAAAGCAAACAAGCCCAGGCCCGAAAGCATCCTCTCCCATCGCACTCAATCCATCTTTTCAGAACTGAGTAGAGGTTTAGAGAAACCGCTCTCAGCATCTGCCGCCATCAGGGCCAGCAACAGCTTCATGTTCACAAATGACGACCAGCCAATAGACTTgaccaaacacaaacacaacaaaccAAACTCTTCCCTCTTACTGCAGTCCTCCACTCCGATGCACCAGAAACATGCACTCTCTGACATCGCTGACATGGTTAAGGTTCTTCCAAAAGCCACAACTCCAAAACCTCCGATGCCAGCCAGAATGCCGGTCATGAAGCTGGAGACTGACGTGCGCAGATTTGAAGATGTCTCCAGCGAGATGTACTCAGTCCATAAGCGCAAAGGTCGACAGTCCAACTGGAACCCACAACATCTGCTCATCCTTCAAGCCCAATTCGCTTCCAGCCTTTTTCAGACTTCCGAGGGCAAGTATCTGCTCTCAGACCTGGGCCCTCAGGAGAGGATGCACATCTCTAAGTTCACCGGGCTTTCCATGACCACCATCAGCCACTGGCTGGCCAACGTCAAGTACCAGCTTAGGAAAACTGGAGGAACCAAGTTTTTGAAGAACATGGACACCGGCCATCCGGTTTTCTACTGCAATGACTGTGCATCACAGTTCAGAACGCCATCTGCGTTTATATCCCACCTCGAGAACCACCTGGGTTTCCAAATCAAGGACATGAACAAACTACCTATAGAACACCCGACTAAAATAACAGAGCCCGAACTTTCAAAGGTGCTCACGATCCGGCCCACGGATTCGCAGATCACGGAAGAGGAATCTGACTCAAAGTTCAAATGCAAGCTCTGCAGTCGGACATTTGCCAGCAATCACGCGGTCAAACTTCACTTGAGTAAAACTCACAGTAAATCCCCTGAGAATCATTCACAGTTTGTGGAAATGGACAAAGAGTAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000109493

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045088 lncRNA downstream 654944 37722419 ~ 37724683 (-) True XLOC_022566
TCONS_00045084 lncRNA downstream 655062 37721384 ~ 37724565 (-) False XLOC_022566
TCONS_00045093 lncRNA upstream 10770 38508475 ~ 38634582 (-) False XLOC_022573
TCONS_00045092 lncRNA upstream 10770 38508475 ~ 38634582 (-) False XLOC_022573
TCONS_00045094 lncRNA upstream 19038 38516743 ~ 38634544 (-) False XLOC_022573
TCONS_00045095 lncRNA upstream 101422 38599127 ~ 38634319 (-) False XLOC_022573
TCONS_00045096 lncRNA upstream 101422 38599127 ~ 38634582 (-) False XLOC_022573
TCONS_00044503 mRNA downstream 48881 38329520 ~ 38330746 (-) True XLOC_022571
TCONS_00044501 mRNA downstream 219603 38151393 ~ 38160024 (-) False XLOC_022570
TCONS_00044498 mRNA downstream 543833 37823560 ~ 37835794 (-) True XLOC_022567
TCONS_00044497 mRNA downstream 804597 37566097 ~ 37575030 (-) True XLOC_022565
TCONS_00044496 mRNA downstream 832931 37539068 ~ 37546696 (-) True XLOC_022564
TCONS_00044505 mRNA upstream 1134692 39632397 ~ 39666658 (-) False XLOC_022580
TCONS_00044506 mRNA upstream 1134955 39632660 ~ 39636195 (-) False XLOC_022580
TCONS_00044507 mRNA upstream 1135257 39632962 ~ 39666519 (-) False XLOC_022580
TCONS_00044509 mRNA upstream 1233260 39730965 ~ 39738055 (-) True XLOC_022581
TCONS_00044510 mRNA upstream 1246664 39744369 ~ 39751234 (-) True XLOC_022582
TCONS_00044502 other downstream 219883 38151415 ~ 38159744 (-) True XLOC_022570
TCONS_00044500 other downstream 252058 38127452 ~ 38127569 (-) True XLOC_022569
TCONS_00044499 other downstream 279655 38096820 ~ 38099972 (-) True XLOC_022568
TCONS_00044489 other downstream 1098914 37277073 ~ 37280713 (-) True XLOC_022558
TCONS_00044482 other downstream 1419715 36959791 ~ 36959912 (-) True XLOC_022554
TCONS_00044508 other upstream 1144259 39641964 ~ 39666458 (-) True XLOC_022580
TCONS_00044515 other upstream 1446947 39944652 ~ 39945578 (-) True XLOC_022587
TCONS_00044516 other upstream 1453848 39951553 ~ 39952406 (-) True XLOC_022588
TCONS_00044525 other upstream 2030956 40528661 ~ 40536040 (-) False XLOC_022595
TCONS_00044527 other upstream 2095112 40592817 ~ 40592934 (-) True XLOC_022596

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_01088316_01091350.mRNA True 3263 mRNA 0.49 1 CI01000001 1088316 ~ 1091578 (+)