RNA id: TCONS_00045094


Basic Information

Item Value
RNA id TCONS_00045094
length 325
lncRNA type inter_gene
GC content 0.48
exon number 4
gene id XLOC_022573
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 38473134 ~ 38647152 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gaagaatgaaGCGATGTCATTTTGGAGGGAAGCAACAAAAGAAGCACCAGTTAACCTGTTGACCCAGCGGTGATATGAAGAAGTCTGCATAACCAGTGGATCTGATGGTATGATCTGACGGGGGGCTGTCAGTGCTGAGTGAACCCCTCGAGCCCAGATCAGGACAGGAGCACTTTTGAGGAAGGACAGAGACAGGGATGCTCATGGATGGAAGGACCATCTGACTGCAAATTCTGTAAGTGAGGCACGGTGTGATGGAGAGAGCacaaagagacttttatttcatAATGAGGCAGTCTGCTATACTGGAGCTGCATCGAAAATG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045090 lncRNA downstream 18987 38487415 ~ 38497756 (-) False XLOC_022572
TCONS_00045091 lncRNA downstream 19115 38494603 ~ 38497628 (-) True XLOC_022572
TCONS_00045089 lncRNA downstream 19177 38457596 ~ 38497566 (-) False XLOC_022572
TCONS_00045088 lncRNA downstream 792060 37722419 ~ 37724683 (-) True XLOC_022566
TCONS_00045087 lncRNA downstream 792179 37722419 ~ 37724564 (-) False XLOC_022566
TCONS_00044751 lncRNA upstream 169329 38803873 ~ 38807512 (-) True XLOC_022574
TCONS_00044752 lncRNA upstream 225031 38859575 ~ 38864855 (-) True XLOC_022575
TCONS_00045098 lncRNA upstream 313283 38947827 ~ 38949910 (-) True XLOC_022576
TCONS_00044753 lncRNA upstream 377411 39011955 ~ 39012362 (-) True XLOC_022577
TCONS_00045099 lncRNA upstream 780486 39415030 ~ 39455122 (-) True XLOC_022578
TCONS_00044504 mRNA downstream 19038 38379627 ~ 38497705 (-) False XLOC_022572
TCONS_00044503 mRNA downstream 185997 38329520 ~ 38330746 (-) True XLOC_022571
TCONS_00044501 mRNA downstream 356719 38151393 ~ 38160024 (-) False XLOC_022570
TCONS_00044498 mRNA downstream 680949 37823560 ~ 37835794 (-) True XLOC_022567
TCONS_00044497 mRNA downstream 941713 37566097 ~ 37575030 (-) True XLOC_022565
TCONS_00044505 mRNA upstream 997853 39632397 ~ 39666658 (-) False XLOC_022580
TCONS_00044506 mRNA upstream 998116 39632660 ~ 39636195 (-) False XLOC_022580
TCONS_00044507 mRNA upstream 998418 39632962 ~ 39666519 (-) False XLOC_022580
TCONS_00044509 mRNA upstream 1096421 39730965 ~ 39738055 (-) True XLOC_022581
TCONS_00044510 mRNA upstream 1109825 39744369 ~ 39751234 (-) True XLOC_022582
TCONS_00044502 other downstream 356999 38151415 ~ 38159744 (-) True XLOC_022570
TCONS_00044500 other downstream 389174 38127452 ~ 38127569 (-) True XLOC_022569
TCONS_00044499 other downstream 416771 38096820 ~ 38099972 (-) True XLOC_022568
TCONS_00044489 other downstream 1236030 37277073 ~ 37280713 (-) True XLOC_022558
TCONS_00044482 other downstream 1556831 36959791 ~ 36959912 (-) True XLOC_022554
TCONS_00044508 other upstream 1007420 39641964 ~ 39666458 (-) True XLOC_022580
TCONS_00044515 other upstream 1310108 39944652 ~ 39945578 (-) True XLOC_022587
TCONS_00044516 other upstream 1317009 39951553 ~ 39952406 (-) True XLOC_022588
TCONS_00044525 other upstream 1894117 40528661 ~ 40536040 (-) False XLOC_022595
TCONS_00044527 other upstream 1958273 40592817 ~ 40592934 (-) True XLOC_022596

Expression Profile

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