RNA id: TCONS_00044753


Basic Information

Item Value
RNA id TCONS_00044753
length 408
lncRNA type intronic
GC content 0.29
exon number 1
gene id XLOC_022577
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 39011955 ~ 39012362 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tatgctatataagcattctgctgtggcgaccccagattaacaaaaggactaagccaaaaagaaaattaatgaataatatgatatgatatgatatatgatacaatacaacacaacacaatataATATGTGATGTTGAAGCTCAaaacccataatatatatatttttaattgagaCTACAGTcaaaaaactatggaagtcaatagttaccagttttcaacattcttcaaaatatctctttttgtgttcaaaaaagtgGAGGTCgagtaaaatgatgacagaactttcaattttgggtgaattatcccttttacTTAAACAAGTACAGGTTTTGATGTCAAAAACATATTACTGGTttacatatactataaaaataaGCTTATCATAAAGTTGATACGACTAAGGTggtta

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045098 lncRNA downstream 62045 38947827 ~ 38949910 (-) True XLOC_022576
TCONS_00044752 lncRNA downstream 147100 38859575 ~ 38864855 (-) True XLOC_022575
TCONS_00044751 lncRNA downstream 204443 38803873 ~ 38807512 (-) True XLOC_022574
TCONS_00045096 lncRNA downstream 377373 38599127 ~ 38634582 (-) False XLOC_022573
TCONS_00045097 lncRNA downstream 377373 38599963 ~ 38634582 (-) True XLOC_022573
TCONS_00045099 lncRNA upstream 402668 39415030 ~ 39455122 (-) True XLOC_022578
TCONS_00045100 lncRNA upstream 515608 39527970 ~ 39530716 (-) False XLOC_022579
TCONS_00045101 lncRNA upstream 515608 39527970 ~ 39531472 (-) False XLOC_022579
TCONS_00045103 lncRNA upstream 515608 39527970 ~ 39534729 (-) False XLOC_022579
TCONS_00045102 lncRNA upstream 515608 39527970 ~ 39534729 (-) False XLOC_022579
TCONS_00044504 mRNA downstream 514250 38379627 ~ 38497705 (-) False XLOC_022572
TCONS_00044503 mRNA downstream 681209 38329520 ~ 38330746 (-) True XLOC_022571
TCONS_00044501 mRNA downstream 851931 38151393 ~ 38160024 (-) False XLOC_022570
TCONS_00044498 mRNA downstream 1176161 37823560 ~ 37835794 (-) True XLOC_022567
TCONS_00044497 mRNA downstream 1436925 37566097 ~ 37575030 (-) True XLOC_022565
TCONS_00044505 mRNA upstream 620035 39632397 ~ 39666658 (-) False XLOC_022580
TCONS_00044506 mRNA upstream 620298 39632660 ~ 39636195 (-) False XLOC_022580
TCONS_00044507 mRNA upstream 620600 39632962 ~ 39666519 (-) False XLOC_022580
TCONS_00044509 mRNA upstream 718603 39730965 ~ 39738055 (-) True XLOC_022581
TCONS_00044510 mRNA upstream 732007 39744369 ~ 39751234 (-) True XLOC_022582
TCONS_00044502 other downstream 852211 38151415 ~ 38159744 (-) True XLOC_022570
TCONS_00044500 other downstream 884386 38127452 ~ 38127569 (-) True XLOC_022569
TCONS_00044499 other downstream 911983 38096820 ~ 38099972 (-) True XLOC_022568
TCONS_00044489 other downstream 1731242 37277073 ~ 37280713 (-) True XLOC_022558
TCONS_00044482 other downstream 2052043 36959791 ~ 36959912 (-) True XLOC_022554
TCONS_00044508 other upstream 629602 39641964 ~ 39666458 (-) True XLOC_022580
TCONS_00044515 other upstream 932290 39944652 ~ 39945578 (-) True XLOC_022587
TCONS_00044516 other upstream 939191 39951553 ~ 39952406 (-) True XLOC_022588
TCONS_00044525 other upstream 1516299 40528661 ~ 40536040 (-) False XLOC_022595
TCONS_00044527 other upstream 1580455 40592817 ~ 40592934 (-) True XLOC_022596