RNA id: TCONS_00045099


Basic Information

Item Value
RNA id TCONS_00045099
length 441
lncRNA type antisense_over
GC content 0.34
exon number 2
gene id XLOC_022578
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 39415030 ~ 39455122 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACGGTTCCATTTTTGATGAGGAACATTTCTAATAAAATCTCTCGTGCACAGATTTGAGCTTTTAGAAACAAAGTTtattgcacttaaaaaaaaaaagataacaccatgtcatacatttttaaagtacaaATTGAATTTCAGTGTTATTTCAAATAGTTTGAAAGGGGGCATTGCAGTATTGTACATTGGAAATCAATTGTGAGCAACTGCAGTTAAAATATCCACAAAGCTCATAGAAAACAACTGCATAGTTTGAACGCATTAGATGGGGATGCACTAATAATGTGTTTACTTGTAGATCTGATTTGATTTCTGCTGACTTTTCTTTTTCCAGTTCTTAAACACACGATTCATCATTTCATCAAGGACCATAAACCTGCCGTCATCCATCAACCATCAAATCTCCTGCAGAAAAAGACCAAAAAAGGAATCAGGAGAACA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044753 lncRNA downstream 402668 39011955 ~ 39012362 (-) True XLOC_022577
TCONS_00045098 lncRNA downstream 465120 38947827 ~ 38949910 (-) True XLOC_022576
TCONS_00044752 lncRNA downstream 550175 38859575 ~ 38864855 (-) True XLOC_022575
TCONS_00044751 lncRNA downstream 607518 38803873 ~ 38807512 (-) True XLOC_022574
TCONS_00045096 lncRNA downstream 780448 38599127 ~ 38634582 (-) False XLOC_022573
TCONS_00045100 lncRNA upstream 72848 39527970 ~ 39530716 (-) False XLOC_022579
TCONS_00045101 lncRNA upstream 72848 39527970 ~ 39531472 (-) False XLOC_022579
TCONS_00045103 lncRNA upstream 72848 39527970 ~ 39534729 (-) False XLOC_022579
TCONS_00045102 lncRNA upstream 72848 39527970 ~ 39534729 (-) False XLOC_022579
TCONS_00045104 lncRNA upstream 72848 39527970 ~ 39534823 (-) False XLOC_022579
TCONS_00044504 mRNA downstream 917325 38379627 ~ 38497705 (-) False XLOC_022572
TCONS_00044503 mRNA downstream 1084284 38329520 ~ 38330746 (-) True XLOC_022571
TCONS_00044501 mRNA downstream 1255006 38151393 ~ 38160024 (-) False XLOC_022570
TCONS_00044498 mRNA downstream 1579236 37823560 ~ 37835794 (-) True XLOC_022567
TCONS_00044497 mRNA downstream 1840000 37566097 ~ 37575030 (-) True XLOC_022565
TCONS_00044505 mRNA upstream 177275 39632397 ~ 39666658 (-) False XLOC_022580
TCONS_00044506 mRNA upstream 177538 39632660 ~ 39636195 (-) False XLOC_022580
TCONS_00044507 mRNA upstream 177840 39632962 ~ 39666519 (-) False XLOC_022580
TCONS_00044509 mRNA upstream 275843 39730965 ~ 39738055 (-) True XLOC_022581
TCONS_00044510 mRNA upstream 289247 39744369 ~ 39751234 (-) True XLOC_022582
TCONS_00044502 other downstream 1255286 38151415 ~ 38159744 (-) True XLOC_022570
TCONS_00044500 other downstream 1287461 38127452 ~ 38127569 (-) True XLOC_022569
TCONS_00044499 other downstream 1315058 38096820 ~ 38099972 (-) True XLOC_022568
TCONS_00044489 other downstream 2134317 37277073 ~ 37280713 (-) True XLOC_022558
TCONS_00044482 other downstream 2455118 36959791 ~ 36959912 (-) True XLOC_022554
TCONS_00044508 other upstream 186842 39641964 ~ 39666458 (-) True XLOC_022580
TCONS_00044515 other upstream 489530 39944652 ~ 39945578 (-) True XLOC_022587
TCONS_00044516 other upstream 496431 39951553 ~ 39952406 (-) True XLOC_022588
TCONS_00044525 other upstream 1073539 40528661 ~ 40536040 (-) False XLOC_022595
TCONS_00044527 other upstream 1137695 40592817 ~ 40592934 (-) True XLOC_022596