RNA id: TCONS_00044507


Basic Information

Item Value
RNA id TCONS_00044507
length 1980
RNA type mRNA
GC content 0.56
exon number 6
gene id XLOC_022580
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 39632397 ~ 39666658 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGAGAAACACTTTCAATCCGTGACTGTTTCTGACCAACACCGAGCACCTAACGAGGGAGCAAAGCGTTTCGAGTTTATTTCGTTCCCAGCGCGTAAATCATGTAGAGAAGGCGCGCAGGTGCTGCAGCTGCGATTTTATTGCAGTTATATAAAGAGATTCAGTGACTTTAATGCGACTTTTAAAGTGAAGCGTGCGTGAAGATATTTTGATAGAAACTGTGCTAGGCGATGTAGAAGAGGTTAAACTGGAGGATTTGACTGTAATTTAGTCCCGTCATGGAGGTCCGAAAGGCGCTCACGTGTGTTTTCCTCACCGTGTTTCTGTGTTCTGGAGACGCTCAGGACTCGGTAACTGATTCAGTGTTGAATTGCTGTGAAGGCGATGTCCTCTTCCTCCTGGACTCCTCTGGCAGCGTGGCCTCCTACGAGTTCTCCCGCATGGTGGATTTCCTCTCCGAACTCCTCCTGCCGTTCTCCCTGGGCCCAGATCATGTGAGGGTGGGCCTGCTGCAGGTCGGGACCGAGCCTCATCTGGAGTTCGGCTTTGATGCCTACAGCTCCCAGCAAGGGCTGCAGGCGGCACTGGAGAGGACTAAACAGCTGAAGGGCGACACCAACACAGTGGAGGCTCTTCTGATGGCCAGGGCGCAGGTTTTGAGGGTGGGTGTCCCGGGAGGAGCCAGGCCAGATCTGCCCCGCGTTCTGGTGTGGCTGACGGATGGAGTGGATCCAGGAAACGTGCAGGAGCCCATGGCCAGGTTGAGGGACGAGGGAGTCGCCGTGCTGGTCGTCTCCACTGGACATGGGAACTATCAGGTGCTGAGGGAGGTCGTGAGTCCGCCTACTGAGGAGCATCTGTTCTTCGTGGACATCGACGACATCAGCATCATCGGCGAAGACCTGAGGAACTCAATCATTGAGATCATCCGCGCTGAGAGACTGCAGGTGAAGTCGGTCTCCTCCACCTCAGCTCAGCTGGAATGGAGGCCTGTGCTGTCCGGCTCCGGCTCTGGATATTACGACATTAAATTCGGCCCCATGAGGACGGGACAGATCCCCGGAGTCCCCGGCGGTGCAAGCACAGACCCTGGGTCATTTCAGAGGATCACGAGACCCGCAGACTCCAGCTCTGCCCAGTTGACCGGCCTGCGTCCCGACACCACATACACTGTCACACTCACACCCAAAAACAACCAGCAGGTGCTCAACACACTGCAAACCAGCTTCACCACACAAACAGTGAATCCTCCAGAGCCGCAGATCCAGCTGTTGTCCTCTTTGTCGGTGTCAGAGTCGAGCTCTAACAGTGTGCGCGTCAGCTGGGCTCCGCTTCTGCCGCGGCTCATCCAGGAGTACCAGCTGGAGTACTCGGCTCTTCCCAGTGGCCCGCTTCGAGTGCTCCGAGTCAGCAACACACACAACTCCACTGTCATCACTGACCTGCAGCCCGACACACAGTATCTGCTCACTGTCAGCGCAAAACAAACTTCAGGCAAAGAGAGAGCCATGACAGTCAAAGTCTGCACGCAAGAGGTGTTGCCGGCTCTGTCCGATCTGCAGCTCTCCTCAGTGGGCGATGAGACAGTGCAGCTGCGCTGGAAGGGAAGTTTCGACGGGCTTCGTGGATACTGGGTCACTTGGGAGCGAGGACACAGCCAGCGCTCCACCCTGTACTTACCACCCAACCGCCTGTCCACCACCCTCAACCACGTGCCCTCCAGAGCCCGAGTCTGTGTCTCGCCGGTGTACAGGACGGCCCGCGGAGAGGGACTCTGCTGCACGGCTTGAGACGCAGTGCTGACCTGAAGCTGTGGATCTGCCAAACACGCAGGACTGAGCGATGAACAGCAGAAACTTTCCACAAATGGACAGATGGAGCTGTTTGAACACTCATCAGCCATAGATGGTGATCTTTAAACACAGCAACACAACATGCACTGACACACAAACCACAAAACCACACTAAATGAGTCTGAACTC

Function

GO:

id name namespace
GO:0062023 collagen-containing extracellular matrix cellular_component

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-030131-5921 Predicted to be active in collagen-containing extracellular matrix. Orthologous to human VWA1 (von Willebrand factor A domain containing 1).

Ensembl:

ensembl_id ENSDART00000110868

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045105 lncRNA downstream 98068 39527970 ~ 39534894 (-) True XLOC_022579
TCONS_00045104 lncRNA downstream 98139 39527970 ~ 39534823 (-) False XLOC_022579
TCONS_00045103 lncRNA downstream 98233 39527970 ~ 39534729 (-) False XLOC_022579
TCONS_00045102 lncRNA downstream 98233 39527970 ~ 39534729 (-) False XLOC_022579
TCONS_00045101 lncRNA downstream 101490 39527970 ~ 39531472 (-) False XLOC_022579
TCONS_00045106 lncRNA upstream 273721 39940240 ~ 39942116 (-) True XLOC_022586
TCONS_00045107 lncRNA upstream 609639 40276158 ~ 40286032 (-) False XLOC_022592
TCONS_00045109 lncRNA upstream 609639 40276158 ~ 40296806 (-) False XLOC_022592
TCONS_00045108 lncRNA upstream 609639 40276158 ~ 40296806 (-) False XLOC_022592
TCONS_00045110 lncRNA upstream 616604 40283123 ~ 40286011 (-) False XLOC_022592
TCONS_00044504 mRNA downstream 1135257 38379627 ~ 38497705 (-) False XLOC_022572
TCONS_00044503 mRNA downstream 1302216 38329520 ~ 38330746 (-) True XLOC_022571
TCONS_00044501 mRNA downstream 1472938 38151393 ~ 38160024 (-) False XLOC_022570
TCONS_00044498 mRNA downstream 1797168 37823560 ~ 37835794 (-) True XLOC_022567
TCONS_00044497 mRNA downstream 2057932 37566097 ~ 37575030 (-) True XLOC_022565
TCONS_00044509 mRNA upstream 64446 39730965 ~ 39738055 (-) True XLOC_022581
TCONS_00044510 mRNA upstream 77850 39744369 ~ 39751234 (-) True XLOC_022582
TCONS_00044511 mRNA upstream 89122 39755641 ~ 39772107 (-) False XLOC_022583
TCONS_00044512 mRNA upstream 89896 39756415 ~ 39772067 (-) True XLOC_022583
TCONS_00044513 mRNA upstream 108412 39774931 ~ 39784368 (-) True XLOC_022584
TCONS_00044502 other downstream 1473218 38151415 ~ 38159744 (-) True XLOC_022570
TCONS_00044500 other downstream 1505393 38127452 ~ 38127569 (-) True XLOC_022569
TCONS_00044499 other downstream 1532990 38096820 ~ 38099972 (-) True XLOC_022568
TCONS_00044489 other downstream 2352249 37277073 ~ 37280713 (-) True XLOC_022558
TCONS_00044482 other downstream 2673050 36959791 ~ 36959912 (-) True XLOC_022554
TCONS_00044515 other upstream 278133 39944652 ~ 39945578 (-) True XLOC_022587
TCONS_00044516 other upstream 285034 39951553 ~ 39952406 (-) True XLOC_022588
TCONS_00044525 other upstream 862142 40528661 ~ 40536040 (-) False XLOC_022595
TCONS_00044527 other upstream 926298 40592817 ~ 40592934 (-) True XLOC_022596
TCONS_00044540 other upstream 1620814 41287333 ~ 41287449 (-) True XLOC_022608

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU14066 True 396 TUCP 0.51 1 CI01000001 478386 ~ 478781 (+)
rainbow trout (Oncorhynchus mykiss) TU14066 True 1265 lncRNA 0.44 3 NC_048565.1 13045384 ~ 13047913 (-)