RNA id: TCONS_00044514


Basic Information

Item Value
RNA id TCONS_00044514
length 5434
RNA type mRNA
GC content 0.40
exon number 4
gene id XLOC_022585
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 39807857 ~ 39849155 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAATGCTCGCGCTGGGCTTTAAATAGCAGGTGTGAGAAAACCGTGTCCTTGCATATACACCCGTCAGACACACcaccatcatcataatcatcGCCATCATGTCCACCGCCAGCGCAGAGACCACCGCACCGGCTCGGGTCTTTTTCCAGCCCGGCGTGGGATGCGCGGGTTCCAGCCCGATGCAACGGGATGACCCGGTGCAGAAAAAGCAAGGCAAAGTGACGGTGAAATACGACCGAAAGGAGCTGCGGAAAAGACTCATTCTTGAGGAATGGATCATTGAGCAACTGAGCGAACTTTACGACTGCGAGGAAGAGGAAATGCCGGAAGTGGAGATCGACATCGATGATCTCCTGGAGGTGAACAGTGAAGACGAGAGAGCCGTCAAACTGCAGGAATCACTGTCAGACTGCTACAAGCCTACTGATGACTTTGTCCGTGAGCTGCTCGGCAGGATAAGAGGAATGAGAAAACTCAGCGCCCCGCAAAAGAAAAGCTTCTAAGTGCTCACAAATGCAGCGACAATCCAGCTACCTGGACTCCATGTCCCACAATCCATCACTCAGCCTACAGCCAATCTCATCCATATCCAAGGATTCATTTCAGGCCAGGAATCAATAAAACCAGAGTTCATTTTCCAAGGACTCGTATCCCACATTGCAACATCTAAACGGAGCGATCCGCTTTCCAATAATCCCACAATAAATCCAAGAGTGCAAAAGTTAACCCGGGACACTCAGGGCTATACAGGCCCAATTAGTACACTGTTAGGTGCAGTATTACAGCTTTTTTTATGAAACCACAAGCTCTTTTATTAAGTatgatttacatatttattttcatttaaagtctgctgttttttttttcttgggaaactgatactgttttttttatttttatgtttttatctcCACCTCTGATTCTGGATCAGCAGTGATGGCCAATATTCATTAGCATCCGTCCTGTTAAATTCGTCATATTGAAGCATGGTGTAATACTTAGGATCATAACCTACTTTTAAGTCATATAACTGATCAGACTACATATCAATACCTGTTTTAATACAACTTTCAAGAATGGTTAACCGTTCTGGTGAAAATAACTACTTTCATAAAGTGAATATGATTAAAGTACATTAAGAGTTGAGAGTGATTTTGGGATGTATTGCTAGAAAGTCAAGGAAAAAGGCTATATTGGGAATTAAACACTAGTGACTGTTCAAGTATACACTGAACTTTATATTATAGAGGGTTGATTGCATTCAGTTGTGGATTATAGTTTTCTGAATTGCATATTTTGGCAAATGCATTCATGCAATGTAGCATACATGTTGTAAACTTTTTAGTATTCGAGCGTATTCTAGTATGCTATTGCGAACATAGCCTGAGATTTGAATGCTTTTAAAAGACAACAAGGGCTGCATGACAGTGGATCAAGCACAATTTCACAGAAAAGCATAACTGTTTGGCATACATATTGGCAAAATGCGTACTAATATTACTAAAACATACAAATGTTCGAAAGAAGGCATGCCCGAAAGCTTGGGGCACGATcaaataatactaaaatgtaTTGATGGGATATGAATTTAGAGCTGTGGCAAAAAACTTTAAGATATGAGTCTGcaattttcaaaatgcattgctATTCTCTCTTAAATGGATTCGGAgtttagtttataacagcagatctGTGTAATACTACAAAATCAACATAAATGATGTGGATTCTCTCAGATCGCCTCCCTGTGGGGAATCACTGAACAGGTTTCATTGGTTTTGCCTGATATCCAATCAGTTTCATTAGTTGGTAGATGtttaatttgtaaaatgaaaagaaatattaTTAGTTAATAGTCTCTTGTTGGCCTGTTTAGCAGAGTCCACCATAGAAAAAACGATGTAGAAGCATTGAAAATATACACAATAATGCATGATATACAGATATTTAATGACATTAGATAACATGCTTTTGCGTGCATTTATAGTTTATACTGTCAATTTAAAGTTCACAATGTTATCAAATATCTAGCATGTGGTGTTTTGAAAACTTCCAAACAGTGAAACGGCTTAGttcttctgctgttaaaaactatcccagagcgccatctactgttaaaatctagcctagagtgccacctattgttaaaaactagcctatacaGCAGAGCTCTATCTGatgtaaaacaaataagcctagagcACAACcaactgttaaaaactatcctagaactccgtctgctgttaaaatctagccttgAGTGCCAcctattgttaaaaactagcctagagtgtcatctgctctatacaaataaacttgaataaaattgaatctgctgtaaaaactatcctagagcgccatctactgttaaaatctagcctagagcaccatctgtggttaaaaaaaaacagcctagagCTCTATCTGATGTAAAACGAATGAGCCTAGAGCACAACcaactgttaaaaactatcctagagctccgtctgctgttaaaatctagccttgAGTGCCAcctattgttaaaaactagcctagagtgtcatctgctcTATACAAATAAATTTGAATTACATTGAATCTGCTGTTTAAAAGTATCCTAGAgtaccatctactgttaaaatctaggctagagcatcatctgtggttaaaaactagcctacagagCCATCAACTGTTAAAAACGAccatagagcgccatctactgttaaaatctAGGCTAGAGCGTCATctgtggttaaaaactagcctacagtgcCATCAACTGTTAAAAATgaccctagagcgccatctgctgttaaaatttaGCCTAGAACATCATttgtggttaaaaactagcctagagcgatatctgctgttagaaactagcttCAAGGGCCATTTGCTGTCAAAAGTTAGTCTATAGCacaatctactgttaaaaacaatactagagcgccatctactgttaaaaataaGCCTTGAGCGCCATCTACCAATATAAAAATAGCCTTCTGCGCCACCTGCTATTAAAATCGAGCCCAGAGATACACCTAGAGCGCaatctactgttaaaaatgagcctagagcaccatctactaaTAAAAAAAGCCTTCtgtgccacctgctgttaaaaactagcctagagcgatgtCTGCtgaaaaaaactagcctagagagacACCTAGTGCgcaatctactgttaaaaacaagccttgATCGCCATCTACTAATATAAAATAGCCTTCTGCACCACCTGCTGTAAACAACAAGCATAGAGCGACACCTAGAGCGTCATctagtgttaaaaactagcctacagcgctatctgctgttaaaatctaggcTGTAGACACCTAGAGCGCCATGTGCTATTAAAATCGAGCCTAGAGAGacacctagagcgccatctactgttaaaaatgagcctagagcgccatctactgatAAAAAATAGCCTTCtgtgccacctgctgttaaaaactagcctagagcgatgtctgctgttaaaaacgagCCTAGAGAGacacctagagcgccatctactgttaaaaacaagccttgAGCGCTATCTACTAATATAAAATAGCCTTCTGCGctacctgctgttaaaaactagcctagagcgacacctagagcgccatctagtgttaaaaactagccttcagcgctatctgctgttaaaatctagcatGTAGAGacacctagagcgccatctagtgttaaaaactagcctacagcgctatctgctgttaaaatctagcctgtAGAGacacctagagcgccatctagtgttaaaaactagcctacagcgctatatgctgttaaaatctagcctgtAGAGACACCTAGAgcgcaatctgctgttaaaaattaagcCTAGAGAGACGCAGaccaccatctactgttaaaaatgagcctagagcgccatctactgatAAAAAATCTTCTGTGCCaccttctgttaaaaactagcctagagtgatatctgctgttaaaaacgagCCTAGAGAGacacctagagcgccatcttctgttaaaaacaagccttgAGCACTATGTACTAACATAAAATAGCCTTCtgcgccacctgctgttaaaaactagcctagagcgacacctagagcgccatctagtgttaaaaactagcctacagcgctatctgctgttaaaatctagcctgtAGAGacacctagagcgccatctgctgttaaaaatcaaGCCTAGAGAcacagagcaccatctactgttaaaaattagcctagaacgccatctacTGATAAAAAATATCCTTCtgtgccacctgctgttaaaatctagcctagagggatatctgctgttaaaaacgagCCAAGAGAGacacctagagcgccatctactgttaaaatctagcctagagacacctagagcgccatctgccattaaaaactagcctagagcacaatctactgttaaaaactagcctagagagccatctactgttaaaacctagcatagagcgccatctgctgtcaaaaactaagctcagaattgATTCAACAGAGAATTTAGAAAATTTAATAATCGCTTTCTCAAAGTTTTTTGTTTGCCACAGCTCTTTACGAATTAGCCAGCAAGTAAAATAGCTATGAATTTCCGTGAGGTCGCGTTGGTAGATCTTCACGACATACATGCTGTGTCTATCGATAGCTGGAGACGTATCTAGTTTGACTCGAGCCATGACTGAAATCTCCTAATATTGTTAGGCTTTTATCCGGTTTCAAACGGAGCCTGCCAAAGAATATAAAATGGCTGAATATTAGCAGTACAAAGTGCTACGGGTGTAAACTGATACATGTATATTCTGTTTCGCTATAAAGAACATTTAATCTTTGTGTCATACTCATGGGTCAGATTTGTGTTTGATGGTGTACGTGGCGTAACAAGGAATCCAGGGGAAAACTATGGTGCTGTTTAAACCTTTAAACCTATATACAGTGCTTTGCAGGCCGAGAGAGAAAGAATAACTGGAGATTCGCTCTGGATGAATCTACTATTTTTATGAGTTTCTGTCAGCCTGCATCTAACTACCATTGTGGGTTTTTAAAAGGTTTGCGTGTGTTTGATTATGCTTCGACCCTTCTCTCTGAGAAGACCGTTCAGGGTTTAggctaattttatttaatttcgtTTCTAAAATGTCGAGGTTTTGAGCGTACGAAAGCtttatttatgcatgttttaTTGGCATGATGGGAACATTATGGATTGCTTTCTTAAAGCGATGATTTGtcttttttatacattattacaAGTATTACTCTTTTAACTATTAAAGTCAcgactttttattcactgtatatcTGCGTTTTGGGTGTTTtgaatttcttttgttttttattatatatgtaaagTGTGGTCTTTTGTGCTGTTCTACTTATAATAAAGGCAAAATGTCTGAACTGTTATAATAAAA

Function

GO:

id name namespace
GO:0042325 regulation of phosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0004865 protein serine/threonine phosphatase inhibitor activity molecular_function

KEGG:

id description
ko01009 Protein phosphatases and associated proteins

ZFIN:

id description
ZDB-GENE-050706-92 Predicted to enable protein serine/threonine phosphatase inhibitor activity. Predicted to act upstream of or within regulation of phosphorylation. Predicted to be located in cytoplasm. Orthologous to human PPP1R14C (protein phosphatase 1 regulatory inhibitor subunit 14C).

Ensembl:

ensembl_id ENSDART00000115330

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045105 lncRNA downstream 272963 39527970 ~ 39534894 (-) True XLOC_022579
TCONS_00045104 lncRNA downstream 273034 39527970 ~ 39534823 (-) False XLOC_022579
TCONS_00045103 lncRNA downstream 273128 39527970 ~ 39534729 (-) False XLOC_022579
TCONS_00045102 lncRNA downstream 273128 39527970 ~ 39534729 (-) False XLOC_022579
TCONS_00045101 lncRNA downstream 276385 39527970 ~ 39531472 (-) False XLOC_022579
TCONS_00045106 lncRNA upstream 91085 39940240 ~ 39942116 (-) True XLOC_022586
TCONS_00045107 lncRNA upstream 427003 40276158 ~ 40286032 (-) False XLOC_022592
TCONS_00045109 lncRNA upstream 427003 40276158 ~ 40296806 (-) False XLOC_022592
TCONS_00045108 lncRNA upstream 427003 40276158 ~ 40296806 (-) False XLOC_022592
TCONS_00045110 lncRNA upstream 433968 40283123 ~ 40286011 (-) False XLOC_022592
TCONS_00044513 mRNA downstream 23489 39774931 ~ 39784368 (-) True XLOC_022584
TCONS_00044511 mRNA downstream 35750 39755641 ~ 39772107 (-) False XLOC_022583
TCONS_00044512 mRNA downstream 35790 39756415 ~ 39772067 (-) True XLOC_022583
TCONS_00044510 mRNA downstream 56623 39744369 ~ 39751234 (-) True XLOC_022582
TCONS_00044509 mRNA downstream 69802 39730965 ~ 39738055 (-) True XLOC_022581
TCONS_00044517 mRNA upstream 109011 39958166 ~ 39959173 (-) False XLOC_022589
TCONS_00044518 mRNA upstream 109068 39958223 ~ 39959784 (-) True XLOC_022589
TCONS_00044519 mRNA upstream 336226 40185381 ~ 40194732 (-) True XLOC_022590
TCONS_00044520 mRNA upstream 385447 40234602 ~ 40250886 (-) True XLOC_022591
TCONS_00044521 mRNA upstream 408078 40257233 ~ 40295610 (-) False XLOC_022592
TCONS_00044508 other downstream 141399 39641964 ~ 39666458 (-) True XLOC_022580
TCONS_00044502 other downstream 1648113 38151415 ~ 38159744 (-) True XLOC_022570
TCONS_00044500 other downstream 1680288 38127452 ~ 38127569 (-) True XLOC_022569
TCONS_00044499 other downstream 1707885 38096820 ~ 38099972 (-) True XLOC_022568
TCONS_00044489 other downstream 2527144 37277073 ~ 37280713 (-) True XLOC_022558
TCONS_00044515 other upstream 95497 39944652 ~ 39945578 (-) True XLOC_022587
TCONS_00044516 other upstream 102398 39951553 ~ 39952406 (-) True XLOC_022588
TCONS_00044525 other upstream 679506 40528661 ~ 40536040 (-) False XLOC_022595
TCONS_00044527 other upstream 743662 40592817 ~ 40592934 (-) True XLOC_022596
TCONS_00044540 other upstream 1438178 41287333 ~ 41287449 (-) True XLOC_022608

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU14042 True 2346 lncRNA 0.35 1 CI01000001 414496 ~ 416841 (+)
striped catfish (Pangasianodon hypophthalmus) TU306028 True 1954 lncRNA 0.42 4 NC_047610.1 21115050 ~ 21132053 (+)