RNA id: TCONS_00044515


Basic Information

Item Value
RNA id TCONS_00044515
length 927
RNA type unprocessed_pseudogene
GC content 0.42
exon number 1
gene id XLOC_022587
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 39944652 ~ 39945578 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGACTGAAGAGTACACAACTCTCGATGATGAGCCAGAAGATGAACTCTGCCGGAAAGATGCGGTCATCAAATTCGGATCCATTGTTATTCCACTCTTTTTTGCTCTTCTGGTTGTGTTTAGCTGCGTTGGTAACACGTTGGTTCTGGTCATCCTGGTGCTGTATGAGAAGCTTAAATCCCTGATCAACCTCCTGATTCTCAATTTAGCTCTGTCAGATCtgctcttcacttttggacttccTTTCTGGGCTTCGTACTTCATCCATGGTTGGACGTTTGGAGAGATTGGCTGTAAAGCGGTCAAGTTTCTGTTCTACGTGGGCTTTTACAGCAGCGTGTTGTTCTTAACTCTAATGACCATTCAGCGCTACATGGCAGTGGTTCATCCTCTGTCCGACTGGAAGAAACACAGATGTTTTTCAGTTGCGCCATTTATCATTTGGATTCTAAGTGGAACAGCTGCGCTGTCAGTCTCACTTCGCAGCAAAGTCTTAATACACGATGATAACCTTTACTGTGAATTTGACAGTATAAAAGTAAAACATGTCGCCGTTTACTCACAAAACATTTTCTTCTTGATGGCGTTTTGCATCATGGGATTTTGCCATGCCAGAATGTTTCAGGTAATAACCCAATCTCAATCGAGACGTCGACGGAAAACTATCAATCTCATATTTTGCATAGGCATAGCGTTCTTCATCGGCTGGGTTCCATACAACATTGTTATGCTCTTGAAAACTTTACAGGATTACGCTTTGCCGCCATTCTTAATCTGTAGTGTCTCCATTCATCTTGACTATGCATTTTATGCTTGCCGTCTATTGGCGTTTTCACACTGCTGCCTAAACCCAGTGCTTTATACTTTAATTGGAGAAAGATTCCAGAAACATTTACGAACATTACCcaagaaaatatgtttaaaataa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000130476

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045106 lncRNA downstream 2536 39940240 ~ 39942116 (-) True XLOC_022586
TCONS_00045105 lncRNA downstream 409758 39527970 ~ 39534894 (-) True XLOC_022579
TCONS_00045104 lncRNA downstream 409829 39527970 ~ 39534823 (-) False XLOC_022579
TCONS_00045103 lncRNA downstream 409923 39527970 ~ 39534729 (-) False XLOC_022579
TCONS_00045102 lncRNA downstream 409923 39527970 ~ 39534729 (-) False XLOC_022579
TCONS_00045107 lncRNA upstream 330580 40276158 ~ 40286032 (-) False XLOC_022592
TCONS_00045109 lncRNA upstream 330580 40276158 ~ 40296806 (-) False XLOC_022592
TCONS_00045108 lncRNA upstream 330580 40276158 ~ 40296806 (-) False XLOC_022592
TCONS_00045110 lncRNA upstream 337545 40283123 ~ 40286011 (-) False XLOC_022592
TCONS_00045111 lncRNA upstream 337545 40283123 ~ 40296513 (-) False XLOC_022592
TCONS_00044514 mRNA downstream 95497 39807857 ~ 39849155 (-) True XLOC_022585
TCONS_00044513 mRNA downstream 160284 39774931 ~ 39784368 (-) True XLOC_022584
TCONS_00044511 mRNA downstream 172545 39755641 ~ 39772107 (-) False XLOC_022583
TCONS_00044512 mRNA downstream 172585 39756415 ~ 39772067 (-) True XLOC_022583
TCONS_00044510 mRNA downstream 193418 39744369 ~ 39751234 (-) True XLOC_022582
TCONS_00044517 mRNA upstream 12588 39958166 ~ 39959173 (-) False XLOC_022589
TCONS_00044518 mRNA upstream 12645 39958223 ~ 39959784 (-) True XLOC_022589
TCONS_00044519 mRNA upstream 239803 40185381 ~ 40194732 (-) True XLOC_022590
TCONS_00044520 mRNA upstream 289024 40234602 ~ 40250886 (-) True XLOC_022591
TCONS_00044521 mRNA upstream 311655 40257233 ~ 40295610 (-) False XLOC_022592
TCONS_00044508 other downstream 278194 39641964 ~ 39666458 (-) True XLOC_022580
TCONS_00044502 other downstream 1784908 38151415 ~ 38159744 (-) True XLOC_022570
TCONS_00044500 other downstream 1817083 38127452 ~ 38127569 (-) True XLOC_022569
TCONS_00044499 other downstream 1844680 38096820 ~ 38099972 (-) True XLOC_022568
TCONS_00044489 other downstream 2663939 37277073 ~ 37280713 (-) True XLOC_022558
TCONS_00044516 other upstream 5975 39951553 ~ 39952406 (-) True XLOC_022588
TCONS_00044525 other upstream 583083 40528661 ~ 40536040 (-) False XLOC_022595
TCONS_00044527 other upstream 647239 40592817 ~ 40592934 (-) True XLOC_022596
TCONS_00044540 other upstream 1341755 41287333 ~ 41287449 (-) True XLOC_022608
TCONS_00044542 other upstream 1400166 41345744 ~ 41345858 (-) True XLOC_022611

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_00353909_00354838.mRNA True 930 mRNA 0.42 1 CI01000001 353909 ~ 354838 (+)